PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02314.40
Common NameJCGZ_07517, LOC105638000
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 130aa    MW: 14517.5 Da    PI: 9.8555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02314.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.8e-211262256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +ykGVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa  +l+g+
  Jcr4S02314.40 12 KYKGVRMRK-WGKWVAEIRQPNS---RGRIWLGSYNTAEEAARAYDAALFCLRGP 62
                   8******99.**********944...48************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-311270IPR001471AP2/ERF domain
PROSITE profilePS5103223.3271269IPR001471AP2/ERF domain
PfamPF008479.8E-151261IPR001471AP2/ERF domain
SMARTSM003807.1E-381275IPR001471AP2/ERF domain
CDDcd000181.72E-301269No hitNo description
SuperFamilySSF541712.75E-231271IPR016177DNA-binding domain
PRINTSPR003675.4E-101324IPR001471AP2/ERF domain
PRINTSPR003675.4E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVRPSEGGRG EKYKGVRMRK WGKWVAEIRQ PNSRGRIWLG SYNTAEEAAR AYDAALFCLR  60
GPSAILNFPM NPPDIPSATD LSPSQIRDVA FRHARKGPEM TASEEASGLL KESSELRGET  120
YFFGLPRSVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20569272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077090.19e-92ethylene-responsive transcription factor ERF018
SwissprotQ9S7L51e-35ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A067KCJ22e-90A0A067KCJ2_JATCU; Uncharacterized protein
STRINGcassava4.1_018072m5e-63(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]