PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02285.60
Common NameJCGZ_11799, LOC105640700
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 563aa    MW: 60410.1 Da    PI: 5.9979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02285.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09379427355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Jcr4S02285.60 379 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 427
                    58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17374445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-10374431No hitNo description
PROSITE profilePS5088815.516376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17377444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6379427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MGDKDKFELE KRSDNNLNYH SPGSMAQDWR FSSTNITNSS LGLVSTDNQM PACRGDLVGV  60
SSCSSASMVD SFSPGLWDHS ANSQNLGFCD INLQSNASTS NPIGIRKGGP GSSRGGIDKM  120
LDMGWTSPSS MLKAGMFLPS VPGVLPQSLS QFPTDSAFIE RAARFSSFNG GNFSDMVNPF  180
GISESMALYS RGGGMMQGPQ EIFAGSGLKA VSGGQSQKNV MNLGEGSKDA SLSVEHVAIG  240
GSPLKNERRS ESLVRSHDEA KQAVGGSGND SEEAEFSGGG HQDEPSMLEG NGGELSAKSF  300
GSKKRKTNGQ DTELDQTKGS QQSVEAAKDN TEVQQKGDQN LNSASNKTAG KQGKQGSQAS  360
DPPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT GKAVMLDEII  420
NYVQSLQRQV EFLSMKLATV NTRLDFNLEG LLAKDILHPR AVPPSSLAFS PEMPIAYPPF  480
NTSQPGLIQA SFPGMETHSD VLRRTNNSQL TPMTGGFKEP TQLPNPWDDE LHNVVQMGYV  540
TSASQDSQDI NGSLPPGHMK AEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080485.10.0transcription factor bHLH49 isoform X1
RefseqXP_020537556.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A067K8S80.0A0A067K8S8_JATCU; Uncharacterized protein
STRINGXP_002514566.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-130bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]