PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02234.50
Common NameJCGZ_26052, LOC105648413
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 297aa    MW: 32765.3 Da    PI: 9.8488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02234.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
    Jcr4S02234.50  57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1651107IPR009057Homeodomain-like
PROSITE profilePS5129414.1852106IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1855104IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-655107IPR009057Homeodomain-like
SMARTSM007176.5E-1056104IPR001005SANT/Myb domain
PfamPF002494.2E-1057101IPR001005SANT/Myb domain
CDDcd001671.05E-759102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVSKNPNPPE GFFLDPNGMA LPGLGPFATA PTTASTTSSS EDPSKKIRKP YTITKSRESW  60
TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT NEHLPPPRPK  120
RKAAHPYPQK AMKNAPTTSQ PSGSFQSSSP LLETGFVRRP ESTSMPLSPI TAAVAGPLVT  180
NNCCSSTEST PRTKPIVEKA PELGNHGHPL RVLPDFAQVY GFIGSVFDPN ATGHLQRLKK  240
MDPIDVETVL LLMRNLSINL TSPDFEDHRR LLSAYEIDTQ AIGPNKTLKD DIQKSVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090178.10.0protein REVEILLE 6
RefseqXP_012090180.10.0protein REVEILLE 6
SwissprotQ8H0W31e-128RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A067JEF40.0A0A067JEF4_JATCU; Uncharacterized protein
STRINGcassava4.1_012341m1e-178(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-106MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]