PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02214.30
Common NameBRC1, JCGZ_04643, LOC105634014
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 469aa    MW: 50792.6 Da    PI: 8.4977
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02214.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77e-37872412133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasece 74 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +        
  Jcr4S02214.30  87 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAINELPSLngsfpdtpkqlsdekrnsdgteqG-------- 174
                    689*************************************************************876654443333333222211111........ PP

            TCP  75 aesssssasnsssg...................kaaksaakskksqksaasalnlak..esrakarararertrekmrik 133
                                                      + +++a+s+ s++s+ s l+l++    r kar rarer +ek + +
  Jcr4S02214.30 175 -------------FdsadveledpkfnqnqsqhLSLSKSACSSTSDTSKGSGLSLSRsdIRRVKARDRARERAKEKENES 241
                    .............1222233333333333333355555556666666666677777754566*************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-4288239IPR005333Transcription factor, TCP
PROSITE profilePS5136931.84189147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEVEEIQTQP CKFSRVGNGR SDTSRIAKKG SGDHQYPDDE EDGELKRSNL GSGSGGGAGG  60
AGGDSGSANR FRGWHPSSRI IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL  120
QDRLGYDQPS KAVEWLIKAA ADAINELPSL NGSFPDTPKQ LSDEKRNSDG TEQGFDSADV  180
ELEDPKFNQN QSQHLSLSKS ACSSTSDTSK GSGLSLSRSD IRRVKARDRA RERAKEKENE  240
SRVAHHQNMN PISQNSTFTE LLTAGISSVS NNNHHTAATT SPSGSEANLF HKSRHWPLTP  300
MDYFGTGFLG PSLSRTAHNS SGFSGQIQLG NSIPQAMTMS IPPFNFSGEN HQEQLQHFPF  360
VSDHLIPVAT TQPGPGGDYN LNFTISSGLA GFNRGTLQSN SSSPSLLPHL QRFSSSPIDG  420
STNVPFFIGA AGPPPPPMEN HQHHQFQPGL QLCYGDGSRH SDQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2494148155Putative transcription factor PCF6
5zkt_B3e-2494148155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544670.0KM454467.1 Jatropha curcas TCP transcription factor BRC1 (BRC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306852.10.0transcription factor TCP2-like
RefseqXP_012072140.10.0transcription factor TCP2-like isoform X1
RefseqXP_012072141.10.0transcription factor TCP2-like isoform X1
RefseqXP_012072142.10.0transcription factor TCP2-like isoform X1
RefseqXP_012072143.10.0transcription factor TCP2-like isoform X1
RefseqXP_020534893.10.0transcription factor TCP2-like isoform X1
TrEMBLA0A067L0H70.0A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGcassava4.1_006618m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]