PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02178.40
Common NameJCGZ_01468
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 378aa    MW: 44615.1 Da    PI: 10.0578
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02178.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-1510871899
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +pk+f++++g++   +  ++l+ ++g +W+v+l   k++g++++++GW+eF++   L    f+vF++d++s+ +++v +++k
  Jcr4S02178.40 10 IPKEFVRKYGND--LPSSVVLNVPTGAKWKVEL--FKCDGEIWFRNGWQEFAEYYSLAHSYFIVFEYDQHSNCHFNVLILDK 87
                   9********988..5667***************..*********************************98888889999987 PP
2B342.61.1e-13179256178
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78 
                    f  ++ +s+v+k  rl ++ +fa++h ++k+++ tl+++d  gr+W++++ ++ ++gr  ++  +GW++F ++n+L++g 
  Jcr4S02178.40 179 FMVAMQSSYVHKGERLHISSSFAKRHLNEKHGDGTLKVMD--GRTWSIRYHVETSRGRprVLVYSGWNKFSRENHLEVGN 256
                    6678899*******************77777776777777..********8866666666999**************995 PP
3B350.15.1e-16286377198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv +++ +l+s  l +p kf+ eh ++++e+   ++ + ++r+W vkl    ++++  l++GW +F+k+n +++g +++F+l++++++ ++v++
  Jcr4S02178.40 286 FFKVVIQPCNLRSP-LNIPMKFVIEHTKQTTED---VILQIENRRWPVKL--LSYPSQSKLSAGWISFAKENSIRVGNVCIFELINSESTLFKVSI 375
                    89999999999998.***********8887665...3345677*******..88888889*************************98888788888 PP

                    E- CS
             B3  97 fr 98 
                    +r
  Jcr4S02178.40 376 VR 377
                    77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.182188IPR003340B3 DNA binding domain
SMARTSM010191.6E-4288IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-17788IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-19788IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-121087IPR003340B3 DNA binding domain
CDDcd100177.70E-121086No hitNo description
Gene3DG3DSA:2.40.330.102.2E-16173256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-15174256IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-16177255No hitNo description
PfamPF023624.0E-12179256IPR003340B3 DNA binding domain
SMARTSM010190.0014179274IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08179292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-20280377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-18281377IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-15286377No hitNo description
PfamPF023626.0E-13286377IPR003340B3 DNA binding domain
SMARTSM010198.6E-14286374IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196300378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLFYCTYQEI PKEFVRKYGN DLPSSVVLNV PTGAKWKVEL FKCDGEIWFR NGWQEFAEYY  60
SLAHSYFIVF EYDQHSNCHF NVLILDKSAT EIDYPVNYNG DDEEINNLEK AENGSPHKKT  120
KIEKPTTKFE PKRGDAEKPR KRKKFKKAVF EGTKNWHMMR KRFLLQKARM VFYSKNPFFM  180
VAMQSSYVHK GERLHISSSF AKRHLNEKHG DGTLKVMDGR TWSIRYHVET SRGRPRVLVY  240
SGWNKFSREN HLEVGNKKLK HEEETSNCQQ FNRWASFQND SSRYPFFKVV IQPCNLRSPL  300
NIPMKFVIEH TKQTTEDVIL QIENRRWPVK LLSYPSQSKL SAGWISFAKE NSIRVGNVCI  360
FELINSESTL FKVSIVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091496.20.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067LCJ30.0A0A067LCJ3_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-21B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]