PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02178.30
Common NameJCGZ_01469
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 438aa    MW: 50051.6 Da    PI: 10.1548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02178.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-153604351797
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +p +f+e+h ++ +e++tl++++   +sW vkl    + +r ++++GW  F+++n L++gD+++F+l+++++  ++v++ 
  Jcr4S02178.30 360 HVPLEFMEAHTKQMKENVTLQVKN---KSWAVKL--LSHADRGFFSAGWFTFARENCLQAGDVCTFELIDSRTMVFKVHIS 435
                    5899******87777877777666...*******..888888899**********************99644443466665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-101471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-91473IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-71972No hitNo description
Gene3DG3DSA:2.40.330.108.0E-9229290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-8232301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-8235313No hitNo description
SMARTSM010191.1E-7349438IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17355436IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-18360436IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-12360435IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083361438IPR003340B3 DNA binding domain
CDDcd100173.74E-15361436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASSSSSRKI GHTFEPTKPH FFKVVLGHAI RDKKIDIPMR FAKKYGNYLP SSVVLKVPSG  60
AKWQVQLIKS DGVIXSASEI DYPYIVNGDN ERINNLEEAQ NDFSGQNLED FLPNRKVKEE  120
SPERINNLDR SASEIDYPYI VNGNNERINN LEEAQNDFSG QNLEDFLPNR KVKEESPENP  180
TRPKTCKKRK LENPTRKFEA EKGHGCYSGK NQLLTKIEKA IVLHRARTAF KSENPFFMVA  240
MNPSYVQAGR KVHISAKFAR KYLKEGGDAT VNDMDGRTWC INYQRRENGT SGGLFSATDK  300
FKVVIFRYNK DPSSSYPSPG KKRKLKHKEK ESANRCKKSK GPSIEGENRC TSRNPLFIKH  360
VPLEFMEAHT KQMKENVTLQ VKNKSWAVKL LSHADRGFFS AGWFTFAREN CLQAGDVCTF  420
ELIDSRTMVF KVHISRNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020539991.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A067LKU50.0A0A067LKU5_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]