PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02178.20
Common NameJCGZ_01470
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 442aa    MW: 50361.8 Da    PI: 10.1351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02178.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1722112199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                    ffk+    d ++++ l +p+kf++++g+    s   +l+ ++g +W+v l  +k+sg++++ +GW+eFvk   L  g  vvF++d++   f  +v 
  Jcr4S02178.20  22 FFKII--LDDNNRK-LAIPRKFIRSYGNY--LSSPAVLKVPTGAKWRVGL--NKCSGEIWFDNGWQEFVKYYSLAHGSLVVFEYDKKnCHF--NVI 108
                    56666..5666665.9**********866..5557***************..********************************9865666..999 PP

                    EE-S CS
             B3  96 vfrk 99 
                    +f+k
  Jcr4S02178.20 109 IFDK 112
                    9987 PP
2B350.24.5e-16345441199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffkvl+++ +l+s  + +p + ++++ ++  e +tl++e+   r+W vkl  +++ gr   +++GW +F+++n L+egD++ F+l+++++  l+v+
  Jcr4S02178.20 345 FFKVLMKPCYLRSTTVNVPLTVVAKCTKQRVEYVTLQVEN---RRWPVKLVRDRSHGRrQKMSGGWISFARENSLQEGDVCCFELINSETMLLKVS 437
                    99************************87766665666555...*******88555555599*************************9988889999 PP

                    EE-S CS
             B3  96 vfrk 99 
                    +fr+
  Jcr4S02178.20 438 IFRN 441
                    9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-2215113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-2315113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.15519113IPR003340B3 DNA binding domain
CDDcd100172.76E-1820111No hitNo description
SMARTSM010192.6E-1422113IPR003340B3 DNA binding domain
PfamPF023627.5E-1523112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-11235294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-10236297IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.93243329IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18339440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16342440IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-14345441IPR003340B3 DNA binding domain
CDDcd100171.20E-16345440No hitNo description
PROSITE profilePS5086312.901345442IPR003340B3 DNA binding domain
SMARTSM010194.2E-18345442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MKDSCPGKGS ERLMFKADNP QFFKIILDDN NRKLAIPRKF IRSYGNYLSS PAVLKVPTGA  60
KWRVGLNKCS GEIWFDNGWQ EFVKYYSLAH GSLVVFEYDK KNCHFNVIIF DKSASEIDYP  120
YDVSNGDTEE PNNLEKEFPK PKTEEETETD VSVEILDGFS LSRKRKVKSP LPCSQPPKKM  180
KPEKPSRNSE GLDFAAKKVN GGLFSEKQRL DGVVVRRQPL TAKEKATAHH RANTNFKSEN  240
PFFIIAMQPS YVHYGAKLAI PANFVRNYFK QKRGKAALST LDGKSWSVEY YYCVSNGKAT  300
ARLGNSKKLK QEKNLSCRQF IPRNSCSESP GATEAAKNFT SLNPFFKVLM KPCYLRSTTV  360
NVPLTVVAKC TKQRVEYVTL QVENRRWPVK LVRDRSHGRR QKMSGGWISF ARENSLQEGD  420
VCCFELINSE TMLLKVSIFR NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1732544028141B3 domain-containing transcription factor VRN1
4i1k_B2e-1732544028141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091521.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_020539998.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A067LJW40.0A0A067LJW4_JATCU; Uncharacterized protein
STRINGcassava4.1_028222m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-29B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]