PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02111.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 737aa MW: 82456.4 Da PI: 5.1226

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02111.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.1	1.3e-34	13	132	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 G F+Pt++elv++yLk k+ g ++++ + i+e+diyk+ePwdLp+ v+++ ke yfF++ ++ r++r+tk+gyWk tgk++e+++ + Jcr4S02111.10 13 GDGFRPTEKELVNHYLKLKMLGCDHRV-SRIPEIDIYKHEPWDLPNhlGVNSNGKESYFFHSCRS-----GRPRRTTKAGYWKGTGKKREIKN-AE 101 667*******************999.77***********5356777888**9866.....599***************9.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 e++ +k ++vfykgr+pkg +++W+mh y++ Jcr4S02111.10 102 EEIVIKSIFVFYKGRTPKGIRAEWTMHVYSA 132 99***********************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.547	10	147	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-37	10	147	IPR003441	NAC domain
Pfam	PF02365	4.5E-16	13	131	IPR003441	NAC domain
Gene3D	G3DSA:1.10.10.10	5.9E-4	309	341	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MASPTSESVQ DVGDGFRPTE KELVNHYLKL KMLGCDHRVS RIPEIDIYKH EPWDLPNHLG 60 VNSNGKESYF FHSCRSGRPR RTTKAGYWKG TGKKREIKNA EEEIVIKSIF VFYKGRTPKG 120 IRAEWTMHVY SAAANQRDFV LCKLFRKAKI YKRAIDITAP TNNDEGTIRA TDNGELESTI 180 PASDEGELCQ DMAPYDLQNQ NSYQKTDYST FYGAKTCKLM TCENQATDAE IIEQVDFHTP 240 TNDDETADTG ELDSTIPAPD KGELCQDMAP YDLENQNSCK KTDYPTFYHG ETRKIMICEN 300 QAIDAAIAEQ GFRKVDPNRC EFANEGFLRG QKHLLKSISR KKPLQIHNNQ PPLVQSSKVP 360 AVIEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN QLQTVGHRVQ VMEQRQQQMM 420 SFLAKAMQSP GFLNQLVQQN NESKRHITGG TKKRRLPGQG EENLASKVGS SPPNGPIVKF 480 HSSMNEAAKA MVHQILKINS SSRLEPPMNN SGPFLIGNLP SSNALDSSNT SSRISELMLP 540 EVPPASGPSS FPIDSGFSVS HTSDAISEVE SSSCAVSDLN MDHLSEMRVN NLVQDTVLPN 600 FNRREAIVPE SAIGIPNTNF VGSEIESKEK ISPLSSVLDM EMPVEVPTDA IFPNQDTEIL 660 VDGIPKLPGI NDVFWEQFLT ASPVTGDTDE SNSNSPQSRM NWEQELQPWE EDGWDNIQNM 720 NHLTEQMELL ASAGTRG

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MASPTSESVQ DVGDGFRPTE KELVNHYLKL KMLGCDHRVS RIPEIDIYKH EPWDLPNHLG  60
VNSNGKESYF FHSCRSGRPR RTTKAGYWKG TGKKREIKNA EEEIVIKSIF VFYKGRTPKG  120
IRAEWTMHVY SAAANQRDFV LCKLFRKAKI YKRAIDITAP TNNDEGTIRA TDNGELESTI  180
PASDEGELCQ DMAPYDLQNQ NSYQKTDYST FYGAKTCKLM TCENQATDAE IIEQVDFHTP  240
TNDDETADTG ELDSTIPAPD KGELCQDMAP YDLENQNSCK KTDYPTFYHG ETRKIMICEN  300
QAIDAAIAEQ GFRKVDPNRC EFANEGFLRG QKHLLKSISR KKPLQIHNNQ PPLVQSSKVP  360
AVIEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDN QLQTVGHRVQ VMEQRQQQMM  420
SFLAKAMQSP GFLNQLVQQN NESKRHITGG TKKRRLPGQG EENLASKVGS SPPNGPIVKF  480
HSSMNEAAKA MVHQILKINS SSRLEPPMNN SGPFLIGNLP SSNALDSSNT SSRISELMLP  540
EVPPASGPSS FPIDSGFSVS HTSDAISEVE SSSCAVSDLN MDHLSEMRVN NLVQDTVLPN  600
FNRREAIVPE SAIGIPNTNF VGSEIESKEK ISPLSSVLDM EMPVEVPTDA IFPNQDTEIL  660
VDGIPKLPGI NDVFWEQFLT ASPVTGDTDE SNSNSPQSRM NWEQELQPWE EDGWDNIQNM  720
NHLTEQMELL ASAGTRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-23	13	147	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-23	13	147	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-23	13	147	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-23	13	147	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-23	13	147	23	168	NAC domain-containing protein 19
3swm_B	1e-23	13	147	23	168	NAC domain-containing protein 19
3swm_C	1e-23	13	147	23	168	NAC domain-containing protein 19
3swm_D	1e-23	13	147	23	168	NAC domain-containing protein 19
3swp_A	1e-23	13	147	23	168	NAC domain-containing protein 19
3swp_B	1e-23	13	147	23	168	NAC domain-containing protein 19
3swp_C	1e-23	13	147	23	168	NAC domain-containing protein 19
3swp_D	1e-23	13	147	23	168	NAC domain-containing protein 19
4dul_A	2e-23	13	147	20	165	NAC domain-containing protein 19
4dul_B	2e-23	13	147	20	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022010	0.0	KF022010.1 Jatropha curcas heat shock factor (HSF) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070226.1	0.0	heat stress transcription factor A-1b
Refseq	XP_020534386.1	0.0	heat stress transcription factor A-1b
Swissprot	Q84T61	1e-100	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A067L5Z1	0.0	A0A067L5Z1_JATCU; Uncharacterized protein
STRING	XP_002520051.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	2e-76	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]