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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02022.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 29142.1 Da PI: 9.6493 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.4 | 1.4e-36 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp G+rFhPtdeel+v+yL++kv g +l++ +vi+++d+++++Pw+Lp + +++ yfFs++ + +++ r +ra+ sgyWk k+++++++ Jcr4S02022.10 10 LPIGYRFHPTDEELLVHYLRRKVFGVPLPA-SVIPDFDVFQTDPWTLPGDL---KEKRYFFSRKWGSDSENYRCKRAAGSGYWKPISKSRQIIASl 101 699***************************.99***************554...4578***********************************997 PP NAM 96 kgelvglkktLvfykgrapkge....ktdWvmheyrl 128 ++ ++g+++tL+f++g++++ + kt+Wvmheyrl Jcr4S02022.10 102 SNYVIGVRTTLIFHQGNKHSNNyydsKTQWVMHEYRL 138 8889**********987776545555*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-45 | 8 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.191 | 10 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEKTNFAVKL PIGYRFHPTD EELLVHYLRR KVFGVPLPAS VIPDFDVFQT DPWTLPGDLK 60 EKRYFFSRKW GSDSENYRCK RAAGSGYWKP ISKSRQIIAS LSNYVIGVRT TLIFHQGNKH 120 SNNYYDSKTQ WVMHEYRLVG SGTIPNTKQV SKMKLGDWVV YRVFQRKRRP KKERIVISKP 180 SSSSKLQTTM EERSDIVGPS QPCSPCCSGV TTDEGGLDQE ETNSSSEGHN FCSPPRVLFI 240 YTGKIFNTYE SCDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-27 | 8 | 167 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | RKRRPKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775338 | 1e-156 | KC775338.1 Jatropha curcas NAC transcription factor 060 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067307.1 | 1e-167 | NAC domain-containing protein 83 | ||||
TrEMBL | R4NEW4 | 1e-166 | R4NEW4_JATCU; NAC transcription factor 060 | ||||
STRING | cassava4.1_031758m | 1e-103 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-46 | NAC domain containing protein 83 |