PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02020.20 | ||||||||
Common Name | JCGZ_06544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 17229.2 Da PI: 4.165 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.1 | 9.7e-12 | 9 | 75 | 2 | 65 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevd....iykvePwdLpkkvkaeekewyfFskrd 65 pGfrF Pt++elv++yL+ kv++k + +e v+k++d +y+ +Pw++ + k++ ++ yf++ ++ Jcr4S02020.20 9 RPGFRFCPTEDELVNFYLQSKVDNKLpFYAEAVVKTLDdrrgLYSNKPWNIFS--KETPSNGYFYVFTK 75 79*********************9986444344555544555*********62..33344557776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-11 | 6 | 76 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-8 | 10 | 64 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDENSLMLRP GFRFCPTEDE LVNFYLQSKV DNKLPFYAEA VVKTLDDRRG LYSNKPWNIF 60 SKETPSNGYF YVFTKLMMRE DNLTVEQPSV SVSLNASLVD IMVDHVWFRD DISTLSPVDD 120 VDLWFGDAIS TLSPDNRTSE VESANSDHNN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088537.1 | 2e-28 | NAC domain-containing protein 30 | ||||
Refseq | XP_012088538.1 | 2e-28 | NAC domain-containing protein 30 | ||||
TrEMBL | A0A067LE82 | 1e-106 | A0A067LE82_JATCU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 7e-08 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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