PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01955.50 | ||||||||
Common Name | JCGZ_25519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SBP | ||||||||
Protein Properties | Length: 255aa MW: 27665.3 Da PI: 9.0062 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 49.2 | 1.4e-15 | 3 | 31 | 48 | 76 |
SEEETTT--SS--S-STTTT-------S- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76 rfh+l efD++krsCrrrLa+hnerrrk+ Jcr4S01955.50 3 RFHQLPEFDQGKRSCRRRLAGHNERRRKP 31 9**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.717 | 1 | 31 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.84E-12 | 3 | 35 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-8 | 3 | 30 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-4 | 3 | 18 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MIRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGSVLSSR YNRLSSTLYD SSNRGGGFLV 60 DFSAYSRLSG RDAWPTGRSS ERSPVNQTAS TGRSIPHPWQ NSSQNPPSNL YLQGSAACGA 120 GFSSSGIPSG ECFTGVGIAD SSCALSLLSN QPWGSRNQEP GLGVNTQGAP MAQSTAPHGA 180 AVNQYSNPSW GFKGSEASSS SHEMCPDLGL GQISQPLNSH FSGELELSQQ NRRQYMELDH 240 SRAFDSSTHH IHWSL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087743.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
Refseq | XP_012087744.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A067JP39 | 0.0 | A0A067JP39_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_029311m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-39 | squamosa promoter binding protein-like 9 |
Publications ? help Back to Top | |||
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