PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01883.30 | ||||||||
Common Name | JCGZ_02482, LOC105629629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25725.5 Da PI: 5.9477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 68 | 110 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Jcr4S01883.30 68 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 110 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.698 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-18 | 62 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.36E-13 | 64 | 115 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-17 | 67 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-15 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-11 | 68 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEPIENIGEY HNYWETKRFL ETEELDRAEF ATYKLILSSW AMDEAFSGYY DSSSPDGAAS 60 SAASKNIVSE RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HEQERRIQAE 120 IMELESGKLK KNSGSEFEQD LPVLLRSKKK KIDQFCDSRN CPIEVLEFSV VYMGEKTLLV 180 SLTCSKRTDT MVKLCEVFES LKLKIITANI TTVSGRLLKT VFIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 66 | 141 | 9 | 78 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066631.1 | 1e-164 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 3e-80 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A067LEK7 | 1e-163 | A0A067LEK7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_015716m | 1e-131 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 1e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105629629 |
Publications ? help Back to Top | |||
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