PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01829.50
Common NameJCGZ_14161
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 750aa    MW: 83475 Da    PI: 4.5663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01829.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.7e-31531741128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp+G rF+Ptdeelv++yLk+k +g+++   + i ev++ +++PwdLp+  + k+++k w+fFs r+  +   +   r++ +g Wk+tg  ++v+ 
  Jcr4S01829.50  53 LPVGWRFDPTDEELVDHYLKRKRRGDPIYGLD-IGEVKLSDYNPWDLPSlsNNKSKDKMWFFFSLREYCN---NGVLRKAGKGSWKSTGDPRSVTP 144
                    799************************98855.***************4346666888999999987644...356677799*************9 PP

            NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++e++g+k+tLvf+   +p    t+Wvmhey++
  Jcr4S01829.50 145 EgSDEEIGTKRTLVFH---NP--GATHWVMHEYEF 174
                    867788**********...34..479*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-4044192IPR003441NAC domain
PROSITE profilePS5100536.98953194IPR003441NAC domain
PfamPF023655.6E-2254173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNKISYSTGP ASFSLHSARA SSSSDSLSLP LLAFHFSSTS VMANSLLLFP HNLPVGWRFD  60
PTDEELVDHY LKRKRRGDPI YGLDIGEVKL SDYNPWDLPS LSNNKSKDKM WFFFSLREYC  120
NNGVLRKAGK GSWKSTGDPR SVTPEGSDEE IGTKRTLVFH NPGATHWVMH EYEFTAELNS  180
PVKGNYVLCK IKENPCEKKK TVKRPMKAEP SCKKPRTKKK ARKGESDFNM ASVSPSLSAF  240
EDQKSKETMG NSTYVVGEPS IRNHMISGLG NQKSNKMPAI PTCENGELSN LEAFDSDNQS  300
QCEMTPISTC IQGEIGSISS FSNQISCQMT DASFSNGGEA RCPMASDLEN YNPNNMACML  360
SYKNCETRCL MASDLENYSP NQMTAMPSCK KGKRSCPAAS GLENQNSYND ITIVSTNNEC  420
ETICPVIFDE NQNSNEMTNE SFYEKGKPNY LGAVDFENQN PSKSIGISTS TEGVWSSLFE  480
EFSDFDNQNQ YQKTDVSLHK DYSSSYVASN VSLLKGYPSP YLSPNIGEIT FQEAQSQNKV  540
TDILIPNYQS PLMTSNFQGA MLQNPIYTTE RPILEDNCPG MVSDGREATF PEMDPQLVEE  600
LTAFFELEDC VNSAPEQPSH TMESQSKSID ISASAEGVKS SLFETPSDFD NQNRYEKTDV  660
SLLKGYPSPY LSPNIGEITL QEAQSQNKVT DILIPNYQSP LMTSNFQGAM LQNPIYTTER  720
PILEDNCPGM VSDGREATFP EMDPQLVEEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-225219814174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753440.0KC775344.1 Jatropha curcas NAC transcription factor 066 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083812.20.0uncharacterized protein LOC105643323
TrEMBLA0A067K7Z00.0A0A067K7Z0_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-30NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]