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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01829.10 | ||||||||
Common Name | JCGZ_14164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22735.2 Da PI: 5.8879 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.3 | 1.4e-40 | 5 | 121 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 G+rFhPt++el+++yLk+kv g + e+ + i++v+++++ePw+Lp + ++ ++ wyfF++r+ ky++++r++r+t+ g+Wk tgkd+++++ Jcr4S01829.10 5 IGYRFHPTEDELINHYLKHKVLGYDDEV-SDIPQVNVLDYEPWELPLT-ANADQVWYFFCERNYKYKNSQRAKRTTRCGFWKVTGKDQKIKD---- 94 69***********************999.56***************54.45689************************************98.... PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 + +kk Lv+++gr p ++t+Wvmhey+ Jcr4S01829.10 95 -IAIKKRLVYHQGRPPG-VRTSWVMHEYH 121 .9*********988775.9*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-40 | 3 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.54 | 3 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-25 | 6 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
METGIGYRFH PTEDELINHY LKHKVLGYDD EVSDIPQVNV LDYEPWELPL TANADQVWYF 60 FCERNYKYKN SQRAKRTTRC GFWKVTGKDQ KIKDIAIKKR LVYHQGRPPG VRTSWVMHEY 120 HPTFNFRIKK RPDDEDEDED VPQPSTTMAS ASGNNPTEED SQLQAHVASF QGYNEMDYSL 180 NSAMQWGSYY YTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 6 | 121 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775346 | 1e-130 | KC775346.1 Jatropha curcas NAC transcription factor 068 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020538560.1 | 1e-136 | NAC domain-containing protein 69 | ||||
Swissprot | B5X570 | 7e-36 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | R4NFZ8 | 1e-135 | R4NFZ8_JATCU; NAC transcription factor 068 | ||||
STRING | cassava4.1_028212m | 3e-86 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 4e-32 | NAC 014 |
Publications ? help Back to Top | |||
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