PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01815.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 552aa MW: 60723.9 Da PI: 10.5561

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01815.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	88	120	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 rW t+E++ll av ++G+++W++Ia+++ Rt Jcr4S01815.30 88 RWGTWEELLLGGAVLRHGTRDWDLIAAELR-ART 120 9****************************9.777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	6.9E-6	88	121	IPR001005	SANT/Myb domain
CDD	cd00167	9.87E-4	88	135	No hit	No description
SMART	SM00297	1.5E-16	167	450	IPR001487	Bromodomain
SuperFamily	SSF47370	1.7E-17	335	451	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	1.4E-14	352	451	IPR001487	Bromodomain
Pfam	PF00439	4.9E-10	356	434	IPR001487	Bromodomain
PROSITE profile	PS50014	9.477	361	431	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MSSNSSFAKP QLLSNSAPGA PRSIPYLRRF NNLFSKNGKT ALLERSLAAI VSDGCVGLEI 60 EQGGTRGGRL IEGVHVDGVM GTEVVIERWG TWEELLLGGA VLRHGTRDWD LIAAELRART 120 ICPYTFTPEV CKAKYDDLQQ RFSGSTALFE ELRKQRMAEL RQALEISEDS IGSLESKLEV 180 LKAERRNDSN VGYGSSQTES LVPFQKSDRV GSPIKETSKD GLSAGSFTQE TSTSWSPVCQ 240 VPASVSVEDT EAKPEVSVSL KQAQMSSFGN LAGNISMVQG GSIRRRRGKR KRKDLSKDVK 300 EGSVGESDFW GSTDVLSATR NKENSTSSSG QTGRCFGTED KNKGSIKDGI TDLMGIFDSI 360 AENKCATVFR RRLDSQKRGR YKKMILQHMD FDTLRSRIAS CTITSVKEVF RDLLLLANNA 420 LVFYSRTTRE YKSALLLREI VTKSLQQHLK DYISKTTITL LSSTPQMLHP PVKPRSARPV 480 NRKLSGKVPK DGNDAAKTPN IAKKPSNVHS PPSAESLTVK KKGSGRPRKA GHGNGTQQPE 540 NPPRGRKRTR AR

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MSSNSSFAKP QLLSNSAPGA PRSIPYLRRF NNLFSKNGKT ALLERSLAAI VSDGCVGLEI  60
EQGGTRGGRL IEGVHVDGVM GTEVVIERWG TWEELLLGGA VLRHGTRDWD LIAAELRART  120
ICPYTFTPEV CKAKYDDLQQ RFSGSTALFE ELRKQRMAEL RQALEISEDS IGSLESKLEV  180
LKAERRNDSN VGYGSSQTES LVPFQKSDRV GSPIKETSKD GLSAGSFTQE TSTSWSPVCQ  240
VPASVSVEDT EAKPEVSVSL KQAQMSSFGN LAGNISMVQG GSIRRRRGKR KRKDLSKDVK  300
EGSVGESDFW GSTDVLSATR NKENSTSSSG QTGRCFGTED KNKGSIKDGI TDLMGIFDSI  360
AENKCATVFR RRLDSQKRGR YKKMILQHMD FDTLRSRIAS CTITSVKEVF RDLLLLANNA  420
LVFYSRTTRE YKSALLLREI VTKSLQQHLK DYISKTTITL LSSTPQMLHP PVKPRSARPV  480
NRKLSGKVPK DGNDAAKTPN IAKKPSNVHS PPSAESLTVK KKGSGRPRKA GHGNGTQQPE  540
NPPRGRKRTR AR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	290	RRRGKRK
2	285	293	RRGKRKRKD
3	544	550	GRKRTRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091531.1	0.0	uncharacterized protein LOC105649487 isoform X1
TrEMBL	A0A067JAS1	0.0	A0A067JAS1_JATCU; Uncharacterized protein
STRING	cassava4.1_006787m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6304	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	3e-32	DNA-binding bromodomain-containing protein