PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01815.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 552aa MW: 60723.9 Da PI: 10.5561 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 88 | 120 | 3 | 36 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 rW t+E++ll av ++G+++W++Ia+++ Rt Jcr4S01815.30 88 RWGTWEELLLGGAVLRHGTRDWDLIAAELR-ART 120 9****************************9.777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 6.9E-6 | 88 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.87E-4 | 88 | 135 | No hit | No description |
SMART | SM00297 | 1.5E-16 | 167 | 450 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.7E-17 | 335 | 451 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.4E-14 | 352 | 451 | IPR001487 | Bromodomain |
Pfam | PF00439 | 4.9E-10 | 356 | 434 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 9.477 | 361 | 431 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MSSNSSFAKP QLLSNSAPGA PRSIPYLRRF NNLFSKNGKT ALLERSLAAI VSDGCVGLEI 60 EQGGTRGGRL IEGVHVDGVM GTEVVIERWG TWEELLLGGA VLRHGTRDWD LIAAELRART 120 ICPYTFTPEV CKAKYDDLQQ RFSGSTALFE ELRKQRMAEL RQALEISEDS IGSLESKLEV 180 LKAERRNDSN VGYGSSQTES LVPFQKSDRV GSPIKETSKD GLSAGSFTQE TSTSWSPVCQ 240 VPASVSVEDT EAKPEVSVSL KQAQMSSFGN LAGNISMVQG GSIRRRRGKR KRKDLSKDVK 300 EGSVGESDFW GSTDVLSATR NKENSTSSSG QTGRCFGTED KNKGSIKDGI TDLMGIFDSI 360 AENKCATVFR RRLDSQKRGR YKKMILQHMD FDTLRSRIAS CTITSVKEVF RDLLLLANNA 420 LVFYSRTTRE YKSALLLREI VTKSLQQHLK DYISKTTITL LSSTPQMLHP PVKPRSARPV 480 NRKLSGKVPK DGNDAAKTPN IAKKPSNVHS PPSAESLTVK KKGSGRPRKA GHGNGTQQPE 540 NPPRGRKRTR AR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 290 | RRRGKRK |
2 | 285 | 293 | RRGKRKRKD |
3 | 544 | 550 | GRKRTRA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091531.1 | 0.0 | uncharacterized protein LOC105649487 isoform X1 | ||||
TrEMBL | A0A067JAS1 | 0.0 | A0A067JAS1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_006787m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6304 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 3e-32 | DNA-binding bromodomain-containing protein |