PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01813.40

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 2198aa MW: 243043 Da PI: 9.167

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01813.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	8.9e-06	1912	1933	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++ +tG C+ G++Ck +H++ Jcr4S01813.40 1912 CPTYEATGSCPQGSKCKLHHPK 1933 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0056	1857	1882	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.798	1857	1883	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.086	1884	1910	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.789	1884	1911	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.49	1911	1933	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.784	1912	1934	IPR000571	Zinc finger, CCCH-type
Pfam	PF10664	1.5E-44	2078	2186	IPR018922	NAD(P)H-quinone oxidoreductase subunit M

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0055114	Biological Process	oxidation-reduction process
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0016655	Molecular Function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2198 aa Download sequence Send to blast
MDPPRPSYFH QTRYAHQPPA PPPHHHPFPN NPNIYASHHS SLLAALPPPS LRPQAQQLPQ 60 PPLPSFRPVP SPQPFNSQNS QFNYNPNNFS PSNHPGSTQH PDFHKFTQSP RVLHQKPFDD 120 ELPRRLPDYI RENRSDLREP PRVLPDRWST RSISHANLDP DSYRRQLDNH PFSPMKIRHD 180 LESNSRFIEE HKQREELLLV RGDDNYHRRN QFGSTSDRTS RDFQVVSNRM NHSSLYENLR 240 GFSYDGQLNE NQRRVHEREV NEDMLDSFID IGSNQIGDPD GIRVGSVKRE HYRIQKPSYR 300 NREDDRVHYS GYFDDSKSSF RGKDQNLYAD HDMEEQVRVG SPVELDVSFK SNSLVAKAIL 360 TPASNSAGVS DSNLTPKNGK VRKLLVLNKD SACSSPLKPN EGTVKLDNAS VTNYSAGSDD 420 DLKQLKEEVP VSGTGDMLDS SSLPGSSRAK VSPAKSKLEN SSADTLSNKK ETNVVSGKAF 480 SLKAGKKKKI VKRVVKKVVD PNLSSSISQR IKESNEPVIA DGFVHGQPAS SEPEKDAAIA 540 SFDIVNSQPC SSEMTVMPEN DKVERFAKAM TLENGTSDNS GRLCVPGTKR KWNRSTSPLG 600 SSSHEETKIN DNITNGISAN NMHLISETGK HYTKSIGENT IFDIHSVEEA SQQLCRNRDL 660 SLPENNAPSG SPKVLLSSEC NASFGLLNPG KIKTPASLCN TTSGDGHKNC LVNSPRRNTV 720 SDDQTTDVGC EQPFKSKGEL EIQNATTSAS SSSEGVGTVI SSDNSHTIAG EINFSSHGTS 780 GYIHNQPSRD KFTTSLKDVS LGRSLSCMVS GGGSKENTPN LTESKKNVET PELDLSRPEG 840 NDMYLEPVNM VRPGCWVDTT LRLSFKNPTP TEFTVSGDGC GNVGLQSCTD GVTSFPKKNS 900 TDSGSINDVS SSGTSPQNTK KRKFSDSQLE LTCPVASDVK EGPVTICTSV SGVEVPSNSC 960 NGLMQSEAEA RVSVLHPFSD SGPPYLQREI TTSGDHPSGE GYRSTAASLK DAIGDGGLKG 1020 THSCSAAVEL EIPVVQSLCL SRFECEQIAG VTPVMPGSSP QKNSICIGCE VRKMNVDSEQ 1080 AIVDGGTTKC VFPSELQSPD LDGMDVENDS CHHVKNDLPS VLNYLSSLRD GTGVSTPRSS 1140 NEVIGLVPDT LSDMNSLETL PDFPSTSHDQ LSIEKVGGHD ENILGKTATQ GGSNISALTS 1200 GSPNTENNLN SDHGVENDHL FSRRIASLPS QASRNSTQIL TTFNGEKYGR KNQLTHAVSR 1260 IYPGRPSFGF TAKSTPSSTH ISKSRTWHRT DNSSTSASPG NKVISSTVPA QRQLPKKMTK 1320 LLGTSYIRKG NSLVRKPIPV TGQFQGSNIL SSSVPRLNSL GTDEVKNDGP DTRTTVDPPN 1380 FVRTGGHASF ERPRTPPLPS ATKMPNHATN SFGDLISSSL AQPLHDCAAE IAPDPMTSPE 1440 SKNVLKSSED VIKNVENSMV QTGQINILDY NNETNDGNLV SSNVNSIKYV KQKLNQLVAT 1500 SNPHSLSVNH AHNIPAIPSD SYYKRRKNQL IRTSLDNQVK VAVGMSDESV NSEGKSLHSI 1560 SSSQSLNKRK LRKDVTKTRK PSKFSLVWTL RSSRLSNDDG GSLNRQKVLP HLFPWKRATY 1620 WRNFMPTSVV SSGNSSSSTI RKLLLLRKRD TVYTRSKHGF SLRKSKVLGV GGSSLKWSKS 1680 LERRSKKVNE EATLAVAEAE RKKREQSDAS RAISGTKNRN SSRKSVYCIE LHQVGGDPGE 1740 RIFRIGPVRY KMDSSRRTLQ RISGGLFLKF FTLHDGSSNF AALQTEKDAK RSYVPRRLVI 1800 GKHEYVRIGN GNQLVRDPKK RTRILASEKV RWSLHTARSR LARKRNADCK LTHKVIPERM 1860 PDCSYFMQGL CTNKDCPYRH VHVNPNAPTC EGFLRGYCAD GDECRKKHSY VCPTYEATGS 1920 CPQGSKCKLH HPKNRSKGKK SKQSREKKKA QGRYFGSMNI NTSDPGPAVS EKHLVEDNDN 1980 IGSEGSIADY ISLDFSGETA ESTNIVEEQT SFRDSDPMDL SANHSSLCHG RIEFVMHEEK 2040 KKRSSRRRRN KSTQPRPVEK QVNVKSKNMS REYGGQWLSS VTRHVRIYAA YIDPETWEFD 2100 QTQMDKLTLL LDPTNEFVWT DETCHKVYSY FQELVDHYEG APLTEYTLRL IGSDIEHYIR 2160 KLLYDGEIKY NMNARVLNFS MGKPRVLLNN DDQLRDAQ

Sequence ? help Back to Top

Protein Sequence Length: 2198 aa Download sequence Send to blast

MDPPRPSYFH QTRYAHQPPA PPPHHHPFPN NPNIYASHHS SLLAALPPPS LRPQAQQLPQ  60
PPLPSFRPVP SPQPFNSQNS QFNYNPNNFS PSNHPGSTQH PDFHKFTQSP RVLHQKPFDD  120
ELPRRLPDYI RENRSDLREP PRVLPDRWST RSISHANLDP DSYRRQLDNH PFSPMKIRHD  180
LESNSRFIEE HKQREELLLV RGDDNYHRRN QFGSTSDRTS RDFQVVSNRM NHSSLYENLR  240
GFSYDGQLNE NQRRVHEREV NEDMLDSFID IGSNQIGDPD GIRVGSVKRE HYRIQKPSYR  300
NREDDRVHYS GYFDDSKSSF RGKDQNLYAD HDMEEQVRVG SPVELDVSFK SNSLVAKAIL  360
TPASNSAGVS DSNLTPKNGK VRKLLVLNKD SACSSPLKPN EGTVKLDNAS VTNYSAGSDD  420
DLKQLKEEVP VSGTGDMLDS SSLPGSSRAK VSPAKSKLEN SSADTLSNKK ETNVVSGKAF  480
SLKAGKKKKI VKRVVKKVVD PNLSSSISQR IKESNEPVIA DGFVHGQPAS SEPEKDAAIA  540
SFDIVNSQPC SSEMTVMPEN DKVERFAKAM TLENGTSDNS GRLCVPGTKR KWNRSTSPLG  600
SSSHEETKIN DNITNGISAN NMHLISETGK HYTKSIGENT IFDIHSVEEA SQQLCRNRDL  660
SLPENNAPSG SPKVLLSSEC NASFGLLNPG KIKTPASLCN TTSGDGHKNC LVNSPRRNTV  720
SDDQTTDVGC EQPFKSKGEL EIQNATTSAS SSSEGVGTVI SSDNSHTIAG EINFSSHGTS  780
GYIHNQPSRD KFTTSLKDVS LGRSLSCMVS GGGSKENTPN LTESKKNVET PELDLSRPEG  840
NDMYLEPVNM VRPGCWVDTT LRLSFKNPTP TEFTVSGDGC GNVGLQSCTD GVTSFPKKNS  900
TDSGSINDVS SSGTSPQNTK KRKFSDSQLE LTCPVASDVK EGPVTICTSV SGVEVPSNSC  960
NGLMQSEAEA RVSVLHPFSD SGPPYLQREI TTSGDHPSGE GYRSTAASLK DAIGDGGLKG  1020
THSCSAAVEL EIPVVQSLCL SRFECEQIAG VTPVMPGSSP QKNSICIGCE VRKMNVDSEQ  1080
AIVDGGTTKC VFPSELQSPD LDGMDVENDS CHHVKNDLPS VLNYLSSLRD GTGVSTPRSS  1140
NEVIGLVPDT LSDMNSLETL PDFPSTSHDQ LSIEKVGGHD ENILGKTATQ GGSNISALTS  1200
GSPNTENNLN SDHGVENDHL FSRRIASLPS QASRNSTQIL TTFNGEKYGR KNQLTHAVSR  1260
IYPGRPSFGF TAKSTPSSTH ISKSRTWHRT DNSSTSASPG NKVISSTVPA QRQLPKKMTK  1320
LLGTSYIRKG NSLVRKPIPV TGQFQGSNIL SSSVPRLNSL GTDEVKNDGP DTRTTVDPPN  1380
FVRTGGHASF ERPRTPPLPS ATKMPNHATN SFGDLISSSL AQPLHDCAAE IAPDPMTSPE  1440
SKNVLKSSED VIKNVENSMV QTGQINILDY NNETNDGNLV SSNVNSIKYV KQKLNQLVAT  1500
SNPHSLSVNH AHNIPAIPSD SYYKRRKNQL IRTSLDNQVK VAVGMSDESV NSEGKSLHSI  1560
SSSQSLNKRK LRKDVTKTRK PSKFSLVWTL RSSRLSNDDG GSLNRQKVLP HLFPWKRATY  1620
WRNFMPTSVV SSGNSSSSTI RKLLLLRKRD TVYTRSKHGF SLRKSKVLGV GGSSLKWSKS  1680
LERRSKKVNE EATLAVAEAE RKKREQSDAS RAISGTKNRN SSRKSVYCIE LHQVGGDPGE  1740
RIFRIGPVRY KMDSSRRTLQ RISGGLFLKF FTLHDGSSNF AALQTEKDAK RSYVPRRLVI  1800
GKHEYVRIGN GNQLVRDPKK RTRILASEKV RWSLHTARSR LARKRNADCK LTHKVIPERM  1860
PDCSYFMQGL CTNKDCPYRH VHVNPNAPTC EGFLRGYCAD GDECRKKHSY VCPTYEATGS  1920
CPQGSKCKLH HPKNRSKGKK SKQSREKKKA QGRYFGSMNI NTSDPGPAVS EKHLVEDNDN  1980
IGSEGSIADY ISLDFSGETA ESTNIVEEQT SFRDSDPMDL SANHSSLCHG RIEFVMHEEK  2040
KKRSSRRRRN KSTQPRPVEK QVNVKSKNMS REYGGQWLSS VTRHVRIYAA YIDPETWEFD  2100
QTQMDKLTLL LDPTNEFVWT DETCHKVYSY FQELVDHYEG APLTEYTLRL IGSDIEHYIR  2160
KLLYDGEIKY NMNARVLNFS MGKPRVLLNN DDQLRDAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6hum_M	9e-25	2078	2186	3	108	NAD(P)H-quinone oxidoreductase subunit M
6nbq_M	9e-25	2078	2186	3	108	NAD(P)H-quinone oxidoreductase subunit M
6nbx_M	9e-25	2078	2186	3	108	NAD(P)H-quinone oxidoreductase subunit M
6nby_M	9e-25	2078	2186	3	108	NAD(P)H-quinone oxidoreductase subunit M
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020536893.1	0.0	uncharacterized protein At1g21580 isoform X2
TrEMBL	A0A067K9S4	0.0	A0A067K9S4_JATCU; Uncharacterized protein
STRING	XP_002520303.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6103	10	10