PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01806.10
Common NameJCGZ_08349, LOC105635494
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 447aa    MW: 47381.8 Da    PI: 6.1071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01806.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20231281256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a++k++g+
  Jcr4S01806.10 231 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALKFRGN 281
                    7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-22231289IPR016177DNA-binding domain
SMARTSM003801.1E-37231294IPR001471AP2/ERF domain
PfamPF008473.3E-14231280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-33231289IPR001471AP2/ERF domain
PROSITE profilePS5103225.752231288IPR001471AP2/ERF domain
PRINTSPR003671.3E-11232243IPR001471AP2/ERF domain
CDDcd000182.45E-15239290No hitNo description
PRINTSPR003671.3E-11254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVGGRDDNQE EESHPRIVLP SQSLLLSNQP IIREGVITQS LPTTSTTMLP AAGYGSPREI  60
SAMVSALTHV VSGQRVGGGG DGGGAAAAGG SGRGDLGSSY GVGSFGSAIT PGYTSTTDYS  120
STSSSLSTYS SGSGSSGFWI GQKRSREEEE GSATQLIESV PRVYRGFGDF RISQGDSSSS  180
SATPVTEEAA ASVIIPTPPT GTATATTTGT APPTSSTETV SYEETGERRR RYRGVRQRPW  240
GKWAAEIRDP HKAARVWLGT FDTAEAAARA YDEAALKFRG NRAKLNFPEH VRVLPPPPIQ  300
TVAVPYSHQP QPTPPQQTAP APAPPYFHFQ GDNIRDYWEY SQLLQSTGDF HVQPSSLLEQ  360
MFYNQQLASL QQNFSFSQLS STSAPPFLAA ASSSGSSSTS SSASFPPLLP GQQLGYFRSP  420
QNQNQPTGSD IPVPPWSDSS HYPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22230291163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073955.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A067KKB80.0A0A067KKB8_JATCU; Uncharacterized protein
STRINGPOPTR_0005s21690.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-23ethylene response factor 110
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]