PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01784.40 | ||||||||
Common Name | JCGZ_16114, LOC105630934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26934.9 Da PI: 8.0159 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7.2e-14 | 32 | 79 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f L +llP++ p K +K++i+ +Av+YIksLq Jcr4S01784.40 32 VHILTERERRKKMRNMFTSLHSLLPQL---P-NKADKSTIVDEAVKYIKSLQ 79 58899*********************7...3.79*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.52E-14 | 27 | 83 | No hit | No description |
SuperFamily | SSF47459 | 6.9E-17 | 28 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.875 | 28 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 31 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 32 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.0E-5 | 159 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.4E-4 | 163 | 237 | No hit | No description |
PROSITE profile | PS51671 | 9.315 | 164 | 242 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAEKVVALLG QKRSRNRDTV NHGGGGESEH EVHILTERER RKKMRNMFTS LHSLLPQLPN 60 KADKSTIVDE AVKYIKSLQE TLQTLEKQRQ EKLQGATIVD SIGQSLITSP TEALFESREA 120 FLAIQGPSKG YPMHNSFPVT LSPACYQTWF SPNVVMSMCG DDAQISVCTL KRPGLLTSIF 180 YILEKHKLDV VSAHVSSEQF RSIYMIHVHA AGGASGRYPE ALSVEDTFKL AAGEMNLWIL 240 SC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 16 | KRSRNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068322.1 | 0.0 | transcription factor bHLH95 | ||||
TrEMBL | A0A067KZY3 | 0.0 | A0A067KZY3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_028789m | 1e-133 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 7e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630934 |
Publications ? help Back to Top | |||
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