PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01772.90
Common NameJCGZ_05550
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 306aa    MW: 34689.8 Da    PI: 7.0056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01772.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.9e-31179452128
            NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+ewyfFs+r++ky++g r+nra+ sgyWkatg+d++++++ +++++g+kk Lvfy+grapkg ktdW+m+eyrl
  Jcr4S01772.90  17 LYGEDEWYFFSPRERKYPNGARPNRAAGSGYWKATGTDRPIVTSsGSKNIGVKKALVFYSGRAPKGIKTDWIMNEYRL 94 
                    34688************************************99868889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.6621122IPR003441NAC domain
SuperFamilySSF1019414.45E-3813122IPR003441NAC domain
PfamPF023655.3E-141694IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEREHSSNFK FPPEKALYGE DEWYFFSPRE RKYPNGARPN RAAGSGYWKA TGTDRPIVTS  60
SGSKNIGVKK ALVFYSGRAP KGIKTDWIMN EYRLLDAATT NPSKSKGSMR LDDWVLCRVR  120
HKGSMSKITY EVQDSYSKDL VWYFPKMEES CCINANYNSD MITDCLNKDC QLLASILAGQ  180
TLPPIETISG VSNQGSNKDN GFTSTYEDNS DKLNSPVTVS SFSNLSPLKR KPNEEVRCDN  240
LISVDKNLDS GDKVDDLLHR DMLSSNNLNY YSHNQSQYSF YNPNMFDPIS GFLELNEFAF  300
IGKHIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-471312763170NO APICAL MERISTEM PROTEIN
1ut4_B2e-471312763170NO APICAL MERISTEM PROTEIN
1ut7_A2e-471312763170NO APICAL MERISTEM PROTEIN
1ut7_B2e-471312763170NO APICAL MERISTEM PROTEIN
3swm_A3e-471312766173NAC domain-containing protein 19
3swm_B3e-471312766173NAC domain-containing protein 19
3swm_C3e-471312766173NAC domain-containing protein 19
3swm_D3e-471312766173NAC domain-containing protein 19
3swp_A3e-471312766173NAC domain-containing protein 19
3swp_B3e-471312766173NAC domain-containing protein 19
3swp_C3e-471312766173NAC domain-containing protein 19
3swp_D3e-471312766173NAC domain-containing protein 19
4dul_A2e-471312763170NAC domain-containing protein 19
4dul_B2e-471312763170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544610.0KM454461.1 Jatropha curcas NAP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065118.10.0NAC domain-containing protein 68
SwissprotO492551e-51NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A067LA140.0A0A067LA14_JATCU; NAP-like protein
STRINGXP_002526377.11e-139(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-54NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  5. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]
  6. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  7. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  8. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]