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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01667.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25979.3 Da PI: 6.7145 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Jcr4S01667.50 16 KGPWSPAEDLRLITFIQKHGHENWRALPKLAGLLRCGKSCRLRWINYL 63 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.534 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.76E-22 | 17 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS50090 | 5.726 | 64 | 115 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 67 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 32 | 68 | 196 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGKGRAPCCD KSQVKKGPWS PAEDLRLITF IQKHGHENWR ALPKLAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTKEEEDTI IKLHQTLGNN IAMATELDDH HQWPKKKPRV LYDNRACAVH 120 HNNNTLEEVN KPEIQEISTI DIPFESDFDF WNMLDGLNDN NSYQSSSTEV EDQLNSQSSS 180 SIGDVENRKW LRYLENELGL ETSKDGHQSL SXXXXXXXXX XXNVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-15 | 16 | 97 | 4 | 84 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-15 | 16 | 97 | 58 | 138 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-15 | 16 | 97 | 58 | 138 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-15 | 16 | 97 | 4 | 84 | C-Myb DNA-Binding Domain |
1msf_C | 2e-15 | 16 | 97 | 4 | 84 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034671 | 1e-161 | KM034671.1 Jatropha curcas clone JcMYB051 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087459.1 | 1e-70 | transcription factor MYB63 | ||||
TrEMBL | A0A067JMG3 | 3e-69 | A0A067JMG3_JATCU; MYB family protein | ||||
STRING | XP_002513377.1 | 1e-56 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56160.1 | 1e-55 | myb domain protein 72 |