PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01621.70
Common NameJCGZ_21394, LOC105649499
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 369aa    MW: 40511.1 Da    PI: 8.982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01621.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.5e-54151421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ 
  Jcr4S01621.70  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSn 109
                    79****************************.89***************8888999*************************************9985 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Jcr4S01621.70 110 GAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                    6778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6410178IPR003441NAC domain
PROSITE profilePS5100562.33915178IPR003441NAC domain
PfamPF023653.3E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNNNNSS SKPPGIDSAN KKGSLRLDDW VLCRIYKKNN  180
SQRPMERDKE DSMEGLFANA THVLPIHPKP PSKPTNSYAS VLENEENFFE GILTGGGDGM  240
QNSSISHHHH HHQLAPSSSP KPHISMASAS GSTNCDANSS IPVKRILPSQ YWSNETGSSM  300
AGGGSSSGKR FHGDLNNSCS TATEDNSSFV SLLSQIPQTA PFHPNTFLGS LGDGVLRQQF  360
QLPSMNWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-761518117168NO APICAL MERISTEM PROTEIN
1ut4_B5e-761518117168NO APICAL MERISTEM PROTEIN
1ut7_A5e-761518117168NO APICAL MERISTEM PROTEIN
1ut7_B5e-761518117168NO APICAL MERISTEM PROTEIN
3swm_A8e-761518120171NAC domain-containing protein 19
3swm_B8e-761518120171NAC domain-containing protein 19
3swm_C8e-761518120171NAC domain-containing protein 19
3swm_D8e-761518120171NAC domain-containing protein 19
3swp_A8e-761518120171NAC domain-containing protein 19
3swp_B8e-761518120171NAC domain-containing protein 19
3swp_C8e-761518120171NAC domain-containing protein 19
3swp_D8e-761518120171NAC domain-containing protein 19
4dul_A5e-761518117168NAC domain-containing protein 19
4dul_B5e-761518117168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753070.0KC775307.1 Jatropha curcas NAC transcription factor 029 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091551.10.0NAC transcription factor 25 isoform X1
SwissprotQ8GY421e-122NAC25_ARATH; NAC transcription factor 25
TrEMBLR4NHL80.0R4NHL8_JATCU; NAC transcription factor 029
STRINGXP_002519008.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-124NAC domain containing protein 25
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]