PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01562.10

Common Name

JCGZ_12053, LOC105638892

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 430aa MW: 47987.6 Da PI: 9.2447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01562.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.3e-06	196	218	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+ + H Jcr4S01562.10 196 SCPECGEIFVKPENLELHQAVrH 218 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.099	195	223	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	195	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.3E-24	220	428	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.8E-17	222	427	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MKEIKQNRNQ HPQKSEKLPS WLAVRGLFTC KDLQTQQQKQ EQELKQQKQP QQQKQEQQQN 60 KKEKKHHQNQ EQALEETSKK CKKIKCSGSL CSNTKVMHRP EIASPDIQRK RASMGLTSNN 120 SDTSSRSMKT PLNEINGVLS STNSSLSASS NSSLSNVGSF RGMPFRRFSG CYECRMVVDP 180 VLGFTRDPSL RSSICSCPEC GEIFVKPENL ELHQAVRHAV SELGSEDTSK NIVEIIFQSS 240 WLKKEAPICQ IDRILKVHNT QRTITKFEEY RDSIKAKANK LQKKHPRCIA DGNELLRFYC 300 TSFACSLGLN GSSNLCNSIP HCNVCSIIKN GFKESTTGGV HGHGILTTAT SGKAHDKAAL 360 LEDSNGNNSD KRAMLVCRVI AGRVKKSMEG NMEEYDSVAG AMGVYSNLDE LYVFNPKAIL 420 PCFVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MKEIKQNRNQ HPQKSEKLPS WLAVRGLFTC KDLQTQQQKQ EQELKQQKQP QQQKQEQQQN  60
KKEKKHHQNQ EQALEETSKK CKKIKCSGSL CSNTKVMHRP EIASPDIQRK RASMGLTSNN  120
SDTSSRSMKT PLNEINGVLS STNSSLSASS NSSLSNVGSF RGMPFRRFSG CYECRMVVDP  180
VLGFTRDPSL RSSICSCPEC GEIFVKPENL ELHQAVRHAV SELGSEDTSK NIVEIIFQSS  240
WLKKEAPICQ IDRILKVHNT QRTITKFEEY RDSIKAKANK LQKKHPRCIA DGNELLRFYC  300
TSFACSLGLN GSSNLCNSIP HCNVCSIIKN GFKESTTGGV HGHGILTTAT SGKAHDKAAL  360
LEDSNGNNSD KRAMLVCRVI AGRVKKSMEG NMEEYDSVAG AMGVYSNLDE LYVFNPKAIL  420
PCFVVIYGGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078173.1	0.0	uncharacterized protein LOC105638892
TrEMBL	A0A067K976	0.0	A0A067K976_JATCU; Uncharacterized protein
STRING	XP_002513814.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8473	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105638892

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]