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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01481.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 26959.9 Da PI: 9.7658 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 7.9e-13 | 106 | 194 | 1 | 81 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt+sdv + +rl+l k ++e+ +g+ ++++t++d++g+++ ++l+++ ++ yvl +GWkeF + ++L+e++ +v Jcr4S01481.40 106 FEKQLTSSDVRSDqSRLTLNKAYVERSilpllnreEGNLDDGIKVTIYDPEGNEYPMTLKMWASK-VYVLMGGWKEFYQKQKLRENEDFV 194 99********99879*********999****999955666899****************999987.899999************765444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-14 | 106 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.9E-9 | 106 | 194 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.18E-15 | 106 | 195 | No hit | No description |
SMART | SM01019 | 2.0E-10 | 106 | 211 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-15 | 106 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.797 | 107 | 211 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEPVYPEELK EDTAAALTLS SLKHTKFDKK TLSTLHAMKS NFLNHRPSSL TSQPQVQDFP 60 GSRAIIRQLT GQPRSLLQLK IDNYRPADIP PIAKLKGQIG RCSKPFEKQL TSSDVRSDQS 120 RLTLNKAYVE RSILPLLNRE EGNLDDGIKV TIYDPEGNEY PMTLKMWASK VYVLMGGWKE 180 FYQKQKLREN EDFVTTWGGL AEFAVAGKNS TVARPPQVSA AEGAERRIIR YSVLLFACV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085562.1 | 1e-145 | putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | A0A067L9U6 | 1e-144 | A0A067L9U6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_027543m | 6e-52 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20600.1 | 1e-17 | B3 family protein |