PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01431.70

Common Name

JCGZ_21467, LOC105649571

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 778aa MW: 85813.1 Da PI: 7.0619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01431.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	195	214	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H Jcr4S01431.70 195 ICDFFAK-GWCIRGSSCRFLH 214 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.3E-4	190	216	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-6	190	214	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15	190	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	195	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-6	195	214	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MEFQGNDRQQ IQSCSPLGKS DLGIQSNSLV EDSFCNLKFS GSSNEQLTLR EESHVNDEDS 60 KCLKSREHLI AAGANGSQES VVKDDAHALM IKKNAKVMSE PHSDGKAHLC NSEDMAAETT 120 SSSSIVGHVS NAFATKDCSD MNANGILDSK VKPMEISSED GKERTTTRLV NSDIRTRSLS 180 FSAESKDQNK RPAVICDFFA KGWCIRGSSC RFLHIKSEAD NAKKQLEEDA TAAIFSKGDQ 240 FNEGLRNIME KSKLPDFPDL KATPNGNCAA ISCHFSSERI LALENGENRM LHQLEDEHKF 300 SSLKRKELSH DVNPDTQQFP SSKDDLGISS SLKDVGTENF RHNCTTTDYG SYTSLTNKYN 360 SPSFQNNFPP ENRASSSGSA VTSINYRGVN PSSYLSSLDN LRYIRDKYVN GSSFDGSFSS 420 SGMFPSHLIS AWTGPSFSFS SSLNTSPLGS QKLLDSDRDF RASRSSSLLH SASPLSGPER 480 ENLPMNIASR DPLNFAEHKA KVSSNDWEPS VPFRPSFFIT HTISSSPGSQ YDPLHDSIDL 540 PTAGYKIPFK FSFVSHRMPS LDTLHQPAHG NSSVSRSLGP EHNADKSTLS FHSRFHENVS 600 AKNCYTTGTD MLATGTVVGE TCVVDAQKGT TPNEENASST GERRDIPDMS KVDADHDSSP 660 RHQNDGPRHK KDSKVDKVKQ KREMVVDQKI EGESRAVRHF RAALVDFVKE LLKPTWREGH 720 LSKDAHNTIV KKAVEKVLST LQLHQIPTTM ESIKQYLSSS QPKIAKLVEG YCTKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MEFQGNDRQQ IQSCSPLGKS DLGIQSNSLV EDSFCNLKFS GSSNEQLTLR EESHVNDEDS  60
KCLKSREHLI AAGANGSQES VVKDDAHALM IKKNAKVMSE PHSDGKAHLC NSEDMAAETT  120
SSSSIVGHVS NAFATKDCSD MNANGILDSK VKPMEISSED GKERTTTRLV NSDIRTRSLS  180
FSAESKDQNK RPAVICDFFA KGWCIRGSSC RFLHIKSEAD NAKKQLEEDA TAAIFSKGDQ  240
FNEGLRNIME KSKLPDFPDL KATPNGNCAA ISCHFSSERI LALENGENRM LHQLEDEHKF  300
SSLKRKELSH DVNPDTQQFP SSKDDLGISS SLKDVGTENF RHNCTTTDYG SYTSLTNKYN  360
SPSFQNNFPP ENRASSSGSA VTSINYRGVN PSSYLSSLDN LRYIRDKYVN GSSFDGSFSS  420
SGMFPSHLIS AWTGPSFSFS SSLNTSPLGS QKLLDSDRDF RASRSSSLLH SASPLSGPER  480
ENLPMNIASR DPLNFAEHKA KVSSNDWEPS VPFRPSFFIT HTISSSPGSQ YDPLHDSIDL  540
PTAGYKIPFK FSFVSHRMPS LDTLHQPAHG NSSVSRSLGP EHNADKSTLS FHSRFHENVS  600
AKNCYTTGTD MLATGTVVGE TCVVDAQKGT TPNEENASST GERRDIPDMS KVDADHDSSP  660
RHQNDGPRHK KDSKVDKVKQ KREMVVDQKI EGESRAVRHF RAALVDFVKE LLKPTWREGH  720
LSKDAHNTIV KKAVEKVLST LQLHQIPTTM ESIKQYLSSS QPKIAKLVEG YCTKYGKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091647.1	0.0	protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBL	A0A067JB11	0.0	A0A067JB11_JATCU; Uncharacterized protein
STRING	cassava4.1_004593m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10805	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-37	C3H family protein

Link Out ? help Back to Top
Entrez Gene	105649571

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]