PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01414.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 52555.3 Da PI: 8.6363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 368 | 413 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ Er+RRdri+ ++++Lr+l+Pk +K++Ka++L A++YI +L Jcr4S01414.70 368 KNLVTERNRRDRIRGGLFTLRSLVPKI-----TKMDKASTLGDAINYIVEL 413 55678*********************7.....7***************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.8E-18 | 88 | 237 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 8.26E-11 | 362 | 425 | No hit | No description |
SuperFamily | SSF47459 | 7.98E-17 | 363 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.516 | 364 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-15 | 366 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 367 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-13 | 370 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MDMHERRVAI AKENIPLMIE LQLWVPFTAF EPFDGRFLGS DDDFLSAKRR RESCLYQSIC 60 YLMRQGQTER GLAVKIGDMR GLERAVELLR PFVDSKAWDC CVVWKLGDDP SRFIQWMGCC 120 CSGGGGGDGG KVKEERIDEN VGICRDLYFK HPIRTKACEA LACFPSFMPL YSGIHGEVVL 180 SKQSKWVTRV NASDSKFSHE SIGTRVLIPV SGGLIELFAG KHIPKDQKII EFITSQFNVL 240 KQEVMIAHGF TGLNELCLDP FLEQNMQNLP KPCQLLSLIP QAQVLHPLNQ TNTHSSFVVS 300 SSGSSPPNGL PSLDSHSSYL PQTVISKQSI GKRSAPRKSK KQAGLLPECN NKVAKVNQRS 360 ERDQFRSKNL VTERNRRDRI RGGLFTLRSL VPKITKMDKA STLGDAINYI VELEEEAKKL 420 QDELKETKAE ECKSSDAELL TLKSKALQDG SKNMQPPDNN QDFSGFGRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085390.1 | 0.0 | transcription factor bHLH90 isoform X1 | ||||
TrEMBL | A0A067JRR7 | 0.0 | A0A067JRR7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_031741m | 1e-169 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12265 | 30 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 3e-62 | bHLH family protein |