PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01404.40
Common NameJCGZ_12518, LOC105639829
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 246aa    MW: 27063.8 Da    PI: 8.2701
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01404.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.31.9e-312103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++
  Jcr4S01404.40   2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAA 97 
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l+
  Jcr4S01404.40  98 VETVLR 103
                    998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.751107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGMLRPL PELLSGEEGS  120
RSPTSDEGSE AEGTCTDMWN LQVPNPHSRF SNSRSKVSPK RKRNDEPVTI KRQRLQLQFP  180
PNDLDLRLTP NFSPKTSPCK PEARRSGTPS MNSEESVTTT TTCSEIILGD HQYGNGGERK  240
LLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079381.10.0LOB domain-containing protein 37
SwissprotQ9FN116e-94LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A067K7F70.0A0A067K7F7_JATCU; Uncharacterized protein
STRINGcassava4.1_014772m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-96LOB domain-containing protein 37
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]