PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01397.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 439aa    MW: 49670.5 Da    PI: 6.4456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01397.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11390437347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+ eE++ l ++v+++G g+Wk+I +        Rt+ ++k++w++ 
    Jcr4S01397.20 390 RWSVEEEDALREGVQRFGAGSWKAILNSRSdifDDRTEVDLKDKWRNM 437
                      9*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.293383439IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-12385439IPR009057Homeodomain-like
SuperFamilySSF466891.87E-14385438IPR009057Homeodomain-like
SMARTSM007175.2E-4387439IPR001005SANT/Myb domain
CDDcd116605.45E-19389439No hitNo description
PfamPF002491.2E-9390437IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKEMDPDITL WILEFLARQP VSKLLLNKLI TNTHVPMSSA INNPRFKKTL TLRSIQDEIA  60
NGTSETILES LEIIEELDKI LKIKTLDSMK KAYCAVALDC TMNHLLNGGG SPQKRDGGEV  120
KEEMEAALHD SNAYKRLFER DTRHEAVRLL KEFLREAMDL MGPSFLEAVA RADMEMVEKE  180
KDSDINGRFG VKAGNEVNVG VESGIPDKPE RTDRDKEHQK NDLHDACNCP EGSSRIMDSK  240
EADMTIPSSK YNPIPTPEIN KVKEALKSSS MELKTLPNPS TNAVVSGMAR ETLNPVPLVG  300
PNASVAQTIE SIQTMKNNYG NLIPSHQSLV PKHSLMERNN TACTYEWNDS IDGSPEERAN  360
LHLDSPRRKI ESPLRKYEVP KFVRRRKIKR WSVEEEDALR EGVQRFGAGS WKAILNSRSD  420
IFDDRTEVDL KDKWRNMTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366386RRKIESPLRKYEVPKFVRRRK
2380386KFVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066886.10.0uncharacterized protein LOC105629849
RefseqXP_012066887.10.0uncharacterized protein LOC105629849
TrEMBLA0A2C9V3V11e-145A0A2C9V3V1_MANES; Uncharacterized protein
STRINGcassava4.1_006375m1e-146(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-17MYB_related family protein