PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01394.20 | ||||||||
Common Name | JCGZ_06550, LOC105629389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 28062.5 Da PI: 5.2201 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.9 | 4.5e-28 | 7 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G+rF+Ptd+e++ +yL +k++g +++ + ik++d+y+ + +++ k + +++ek+ yfF+k +kk+ +g r +r+t g+Wk+t k+k++ Jcr4S01394.20 7 LPVGYRFRPTDNEIILYYLFNKASGVSIPS-NPIKDFDLYDDNDQTMMKvfQDTSQEKNFYFFTKLKKKHGKGMRIQRITGLGTWKETQKEKNISW 101 799**************************9.88**************8523334467788**********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+ + f ++ + +++W+m+e+rl Jcr4S01394.20 102 -ENQIIGTKRGFKFVPKKGFE-LNSRWLMDEFRL 133 .999***********655555.79********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-33 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.218 | 7 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-16 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MENSHNLPVG YRFRPTDNEI ILYYLFNKAS GVSIPSNPIK DFDLYDDNDQ TMMKVFQDTS 60 QEKNFYFFTK LKKKHGKGMR IQRITGLGTW KETQKEKNIS WENQIIGTKR GFKFVPKKGF 120 ELNSRWLMDE FRLHSSLLNQ TNQFDEYVVC HIKNEKELRS KSHFYEEDNK VTQEQEASLQ 180 SDSGTFNLKL HQHGSELMDT ISDNLWTTQE VLEPLQLDMI SDNDWITEEE LEKLLLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
4dul_A | 2e-21 | 6 | 152 | 16 | 162 | NAC domain-containing protein 19 |
4dul_B | 2e-21 | 6 | 152 | 16 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775356 | 0.0 | KC775356.1 Jatropha curcas NAC transcription factor 078 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066376.1 | 1e-176 | NAC domain-containing protein 19 | ||||
TrEMBL | R4NG05 | 1e-175 | R4NG05_JATCU; NAC transcription factor 078 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17637 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 3e-24 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105629389 |
Publications ? help Back to Top | |||
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