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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Jcr4S01394.20 |
Common Name | JCGZ_06550, LOC105629389 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family |
NAC |
Protein Properties |
Length: 237aa MW: 28062.5 Da PI: 5.2201 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Jcr4S01394.20 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 89.9 | 4.5e-28 | 7 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lp+G+rF+Ptd+e++ +yL +k++g +++ + ik++d+y+ + +++ k + +++ek+ yfF+k +kk+ +g r +r+t g+Wk+t k+k++
Jcr4S01394.20 7 LPVGYRFRPTDNEIILYYLFNKASGVSIPS-NPIKDFDLYDDNDQTMMKvfQDTSQEKNFYFFTKLKKKHGKGMRIQRITGLGTWKETQKEKNISW 101
799**************************9.88**************8523334467788**********************************99 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g+k+ + f ++ + +++W+m+e+rl
Jcr4S01394.20 102 -ENQIIGTKRGFKFVPKKGFE-LNSRWLMDEFRL 133
.999***********655555.79********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MENSHNLPVG YRFRPTDNEI ILYYLFNKAS GVSIPSNPIK DFDLYDDNDQ TMMKVFQDTS 60 QEKNFYFFTK LKKKHGKGMR IQRITGLGTW KETQKEKNIS WENQIIGTKR GFKFVPKKGF 120 ELNSRWLMDE FRLHSSLLNQ TNQFDEYVVC HIKNEKELRS KSHFYEEDNK VTQEQEASLQ 180 SDSGTFNLKL HQHGSELMDT ISDNLWTTQE VLEPLQLDMI SDNDWITEEE LEKLLLD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-21 | 6 | 152 | 16 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-21 | 6 | 152 | 19 | 165 | NAC domain-containing protein 19 |
4dul_A | 2e-21 | 6 | 152 | 16 | 162 | NAC domain-containing protein 19 |
4dul_B | 2e-21 | 6 | 152 | 16 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC775356 | 0.0 | KC775356.1 Jatropha curcas NAC transcription factor 078 gene, complete cds. |