PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01385.100

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CPP

Protein Properties

Length: 1371aa MW: 151472 Da PI: 8.0948

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01385.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.5	8.3e-16	218	257	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Jcr4S01385.100 218 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 257 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	28.925	137	258	IPR005172	CRC domain
SMART	SM01114	0.26	144	174	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	8.4E-20	218	259	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.1E-12	221	256	IPR005172	CRC domain
Gene3D	G3DSA:3.40.50.1820	5.6E-36	802	1040	IPR029058	Alpha/Beta hydrolase fold
SuperFamily	SSF53474	1.96E-27	803	1040	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF00326	3.4E-6	807	906	IPR001375	Peptidase S9, prolyl oligopeptidase, catalytic domain
Pfam	PF05448	6.3E-7	1073	1230	IPR008391	Acetyl xylan esterase
Gene3D	G3DSA:3.40.50.1820	1.3E-42	1098	1249	IPR029058	Alpha/Beta hydrolase fold
SuperFamily	SSF53474	1.12E-33	1107	1370	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	1.3E-42	1285	1370	IPR029058	Alpha/Beta hydrolase fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008236	Molecular Function	serine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 1371 aa Download sequence Send to blast
MEQSEAISDF APKKLARQLD FTAICRASAN VILTEHSKMQ QPPPPSQSQP HLKLQPHAQQ 60 PPSNPVQSQL QSQPQPILHL QLQTPPKQPP VMPQLQARPH QTPAVRRIPH LVQKIPLSTM 120 PAPKQESPGA RPRNNVEAKE GTPKKAKQCI ASVFAAGIHC NGCNCINCYN NVENEAARQE 180 AVGATLERNP NAFRPKIASS PHGYNPREDA SEAQIVGKHN KGCHCKKSGC LKKYCECFQA 240 NILCSENCKC MDCKNFEGSE ERRALFHGNH NGITCMQQAA NAAVSGAIGS SGYETPLASK 300 KRKNEEILGS VTKDKSAKFQ QENHLRNSAS SFSPSSAPIP CAASATVFGS SRLTYKSPLT 360 DKIQPQDVAQ MCTFFLVLSE KARKALEGKM DKEKTHSVEA TTALSIEGRK DSLNGHDAHK 420 TLPDDDLNRN KATTDRSTDS GTDGCVVEDG RPASPEIDLM CHEQEMMFME VGPPTGVGRL 480 CGNKTQLSSS GHECSEVYAE QEKLILSRFR DFLNMLIFRG SAKETMYSPS AMSKMMDQQE 540 PAEEEIINSA TESGSHEKAY NNAVVKSAVI ATSASNVIQP KNIMCLYNEV TISQSPAVLD 600 ALPTFGYAKP TSKHLSMEVS LYATINCDAS SVSASAKPHE AGGLKRMLIS RLASVKVQAQ 660 IFLLPHSQRT HFSLIRPFTL DSSPLSICIA HPPKLVSYKY GNPALTKAVT EYNTPPPPPT 720 TSTAGEMEKE SIDVQKIRSE FLQVLRSRRS GEVPLSVQNG EPVMNPLYLD NTLPTDKSEA 780 MESCPKKDIK NCKDLVKEEN LYLTTEAYAS RGYVAVAIDS RYHGERAKNK TTYRDALVSS 840 WKKGDKMPFI FDTVWDLIKL ADYLTQRKDI DPKKIGITGE SLGGMHAWFA AAVDTRYSVV 900 APIIGVQGFR WAIENDKWQA RVDSVKPVFE EARIDLGKSA IDKEVVEKVW DRIAPGLASS 960 FDSPYTIPAI APRPLLILNG AEDPRCPLAG LEIPKLRADK AYGEAHSLDK FKLVAQPGIG 1020 HQMTPFMVKE ASDWFDKFLN SAIGGNWKTG GGLVVSGRYA VNREAMESCP KKEIENFKGL 1080 LKEENLYLIT EAGEQGRVPM LILSLKESNE RRPAIVFLHR TNTCKEWLRP LLEAYASRGY 1140 VAIAIDSRYH GERAKTKTTY QDALVSSWRI GDTMPFIFDT VWDLIKLADY LTQREDIDPK 1200 RIGITGESLG GMHAWFAAAA DTRYAVVVPI IGVQGFRWAI DNNRWQARVN SIRPVFEEAQ 1260 KDLGKTEIDK EVVEKASAVW DRIAPGIASK FDSPYTIPAI APRPLLILNG AKDQRCPIAG 1320 LEIPKSRACK AYEEANSLDK FEVVSESGIW HQVTPTMVNE ASDWFDKFLK Q

Sequence ? help Back to Top

Protein Sequence Length: 1371 aa Download sequence Send to blast

MEQSEAISDF APKKLARQLD FTAICRASAN VILTEHSKMQ QPPPPSQSQP HLKLQPHAQQ  60
PPSNPVQSQL QSQPQPILHL QLQTPPKQPP VMPQLQARPH QTPAVRRIPH LVQKIPLSTM  120
PAPKQESPGA RPRNNVEAKE GTPKKAKQCI ASVFAAGIHC NGCNCINCYN NVENEAARQE  180
AVGATLERNP NAFRPKIASS PHGYNPREDA SEAQIVGKHN KGCHCKKSGC LKKYCECFQA  240
NILCSENCKC MDCKNFEGSE ERRALFHGNH NGITCMQQAA NAAVSGAIGS SGYETPLASK  300
KRKNEEILGS VTKDKSAKFQ QENHLRNSAS SFSPSSAPIP CAASATVFGS SRLTYKSPLT  360
DKIQPQDVAQ MCTFFLVLSE KARKALEGKM DKEKTHSVEA TTALSIEGRK DSLNGHDAHK  420
TLPDDDLNRN KATTDRSTDS GTDGCVVEDG RPASPEIDLM CHEQEMMFME VGPPTGVGRL  480
CGNKTQLSSS GHECSEVYAE QEKLILSRFR DFLNMLIFRG SAKETMYSPS AMSKMMDQQE  540
PAEEEIINSA TESGSHEKAY NNAVVKSAVI ATSASNVIQP KNIMCLYNEV TISQSPAVLD  600
ALPTFGYAKP TSKHLSMEVS LYATINCDAS SVSASAKPHE AGGLKRMLIS RLASVKVQAQ  660
IFLLPHSQRT HFSLIRPFTL DSSPLSICIA HPPKLVSYKY GNPALTKAVT EYNTPPPPPT  720
TSTAGEMEKE SIDVQKIRSE FLQVLRSRRS GEVPLSVQNG EPVMNPLYLD NTLPTDKSEA  780
MESCPKKDIK NCKDLVKEEN LYLTTEAYAS RGYVAVAIDS RYHGERAKNK TTYRDALVSS  840
WKKGDKMPFI FDTVWDLIKL ADYLTQRKDI DPKKIGITGE SLGGMHAWFA AAVDTRYSVV  900
APIIGVQGFR WAIENDKWQA RVDSVKPVFE EARIDLGKSA IDKEVVEKVW DRIAPGLASS  960
FDSPYTIPAI APRPLLILNG AEDPRCPLAG LEIPKLRADK AYGEAHSLDK FKLVAQPGIG  1020
HQMTPFMVKE ASDWFDKFLN SAIGGNWKTG GGLVVSGRYA VNREAMESCP KKEIENFKGL  1080
LKEENLYLIT EAGEQGRVPM LILSLKESNE RRPAIVFLHR TNTCKEWLRP LLEAYASRGY  1140
VAIAIDSRYH GERAKTKTTY QDALVSSWRI GDTMPFIFDT VWDLIKLADY LTQREDIDPK  1200
RIGITGESLG GMHAWFAAAA DTRYAVVVPI IGVQGFRWAI DNNRWQARVN SIRPVFEEAQ  1260
KDLGKTEIDK EVVEKASAVW DRIAPGIASK FDSPYTIPAI APRPLLILNG AKDQRCPIAG  1320
LEIPKSRACK AYEEANSLDK FEVVSESGIW HQVTPTMVNE ASDWFDKFLK Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-24	172	267	47	132	Protein lin-54 homolog
5fd3_B	4e-24	172	267	47	132	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009674	1e-39	AP009674.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04O06, TM0487, complete sequence.
GenBank	AP015035	1e-39	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067KGT0	0.0	A0A067KGT0_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5963	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	8e-91	Tesmin/TSO1-like CXC domain-containing protein