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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01324.10 | ||||||||
Common Name | JCGZ_21433, LOC105649534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HSF | ||||||||
Protein Properties | Length: 214aa MW: 24779 Da PI: 9.3497 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.6 | 1.7e-32 | 37 | 141 | 2 | 102 |
HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+y++le++ + k+++sw+++g+ f+v+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk++++ weFkh+ Jcr4S01324.10 37 FLSKTYDLLEENgelgssapdfgsnDGKKIVSWNDEGTGFIVWSPAEFSEFTLPRYFKHNNFSSFIRQLNTYGFKKTSSKL---------WEFKHE 123 9*********55555556666665599*************************************************99876.........****** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 +F++g++++l +i rkk Jcr4S01324.10 124 KFQRGSRHMLVEITRKKC 141 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.9E-35 | 27 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-38 | 33 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.85E-25 | 35 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.7E-29 | 37 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-9 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-9 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAKNLSELNR SIISRRSSAS SSSSGQQSPR TKTPAPFLSK TYDLLEENGE LGSSAPDFGS 60 NDGKKIVSWN DEGTGFIVWS PAEFSEFTLP RYFKHNNFSS FIRQLNTYGF KKTSSKLWEF 120 KHEKFQRGSR HMLVEITRKK CEPSVFPPYL KACHEENTMD ENDRLILLEQ NNNLKRENLE 180 LQMELAQFKA LELKLLDYLA QYMGSHHNKI RRLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 1e-14 | 35 | 139 | 2 | 104 | Putative transcription factor |
5d5x_B | 1e-14 | 35 | 139 | 2 | 104 | Putative transcription factor |
5d5x_E | 1e-14 | 35 | 139 | 2 | 104 | Putative transcription factor |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091595.1 | 1e-159 | heat stress transcription factor B-2a | ||||
TrEMBL | A0A067JB20 | 1e-158 | A0A067JB20_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_029573m | 1e-115 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-38 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Entrez Gene | 105649534 |
Publications ? help Back to Top | |||
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