PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01288.50 | ||||||||
Common Name | JCGZ_16111, LOC105630928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 155aa MW: 17930.2 Da PI: 9.6974 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.5 | 3.5e-29 | 6 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkya.tgkrknratksgy 82 ppG+rF P+de+l+++yL++k ++++ ++ + ike+d+y++eP dLp + + +++++wy ++k + ++ +g r++ra k gy Jcr4S01288.50 6 PPGCRFYPSDEQLLCFYLTNKNNTNRdaddvnsnTNGYDLIKELDLYDYEPFDLPdNscyayGCGGRKRHWYCYAKLRVLNEsRGGRSRRA-KGGY 100 8********************9999977666544333458**************954666553344778****999876655167788886.88** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 W+++g+ ++v +++++g ++ +vfy g + +++ +tdW++ ey+l Jcr4S01288.50 101 WRKSGRVRDVAGPgGKAVIGRRTRFVFYLGnSVKSAIRTDWILYEYAL 148 ***********99666779*********883556678*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-31 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.344 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-17 | 6 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MSFSRPPGCR FYPSDEQLLC FYLTNKNNTN RDADDVNSNT NGYDLIKELD LYDYEPFDLP 60 DNSCYAYGCG GRKRHWYCYA KLRVLNESRG GRSRRAKGGY WRKSGRVRDV AGPGGKAVIG 120 RRTRFVFYLG NSVKSAIRTD WILYEYALID RGKVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-18 | 2 | 150 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-18 | 2 | 150 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-18 | 2 | 150 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-18 | 2 | 150 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-18 | 2 | 150 | 17 | 147 | NAC domain-containing protein 19 |
4dul_A | 1e-18 | 2 | 150 | 14 | 144 | NAC domain-containing protein 19 |
4dul_B | 1e-18 | 2 | 150 | 14 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775339 | 0.0 | KC775339.1 Jatropha curcas NAC transcription factor 061 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068313.1 | 1e-110 | NAC domain-containing protein 83 | ||||
TrEMBL | R4N5R6 | 1e-109 | R4N5R6_JATCU; NAC transcription factor 061 | ||||
STRING | Lus10010037 | 1e-71 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 3e-18 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630928 |
Publications ? help Back to Top | |||
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