PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01285.140
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 306aa    MW: 34422.9 Da    PI: 8.5608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01285.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17177260190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k l++s+v++  ++ lp +f+++h   ++e+ t+tlede g+ +++k+i  k++    l++GW++F  a++L egD +vF+l++  +f
  Jcr4S01285.140 177 FLKSLVRSHVGSCFWMGLPGPFCRAHL--PREDATITLEDECGKGFRMKYIAYKTG----LSAGWRQFSVAHQLLEGDALVFQLIEPCKF 260
                     89************************5..45778****************666665....9**********************9986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-17169261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20172261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-22175261No hitNo description
PfamPF023622.9E-15177260IPR003340B3 DNA binding domain
SMARTSM010193.0E-14177262IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912177268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAEIVKKEAE EGNFNRTAPY GEENDKSVAE EDVTLAQLSL TPSSPRPRPL ASCSSVYLSL  60
SLCLFLFGCL EMLGEMKKGM RVQISCFVQW NRNARAWRKL KNVLRSREGG AAVLELSGVK  120
VVISATPGKH SRGNNKSCRE MHMDAVTRMC TAGETKSPAM IRAEEVQSNL ESTFPSFLKS  180
LVRSHVGSCF WMGLPGPFCR AHLPREDATI TLEDECGKGF RMKYIAYKTG LSAGWRQFSV  240
AHQLLEGDAL VFQLIEPCKF KETKIGERGF IWFQHFMRWL VYLLGGILEH MLHPRLEKED  300
HAVSSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079217.11e-115B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A067K7291e-113A0A067K729_JATCU; Uncharacterized protein
STRINGcassava4.1_006650m2e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-35B3 family protein