PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01276.40
Common NameJCGZ_26305, LOC105648879
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 354aa    MW: 38548.8 Da    PI: 10.3134
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01276.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-1492137247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky
    Jcr4S01276.40  92 KPWTEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 137
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.927722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.95586142IPR017930Myb domain
SuperFamilySSF466898.61E-1788142IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1689141IPR006447Myb domain, plants
SMARTSM007178.3E-1290140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1290136IPR009057Homeodomain-like
PfamPF002495.6E-1292137IPR001005SANT/Myb domain
CDDcd001678.15E-1093137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVKEGTRKCS HCGQNGHNSR TCNHGKGGAG VKLFGVNIFE KQEQPMKKSA SLGNLESLID  60
NNAHHHVDEG YLSDGYINFK RGKAANERKK GKPWTEEEHR TFLAGLKKLG KGDWRGISKN  120
FVTTRTPTQV ASHAQKYYLR QASADIKKRR SSLFDMTLKE PKVLTSQERP ILPSNSSSQV  180
KQASSSSLAL PLRTTTDIPA RAITSAQILN RFPHLCLDTP AIGPAYLATS VPNYTGIPYM  240
LGFPDDGRSF MGARTASAAP LLQMMHYNYS RLAYPFPPNS QGRFAATCVP LTAHPSGIPA  300
PRSYPLGFLQ QGSSTSPTKK ENPPELDLKI GPPPPQSPQE ASLSPQASGP ISVI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090770.10.0probable transcription factor At5g61620 isoform X1
TrEMBLA0A067JSE90.0A0A067JSE9_JATCU; Uncharacterized protein
STRINGXP_002511019.11e-123(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-69MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]