PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01204.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SBP
Protein Properties Length: 384aa    MW: 41886.8 Da    PI: 8.8892
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01204.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4191167278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC adls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Jcr4S01204.40  91 CLVDGCIADLSKCRDYHRRHKVCELHSKTPKVFIKGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 167
                    **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-3483152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.04388165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3889170IPR004333Transcription factor, SBP-box
PfamPF031103.6E-3091164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGYNLKTPWR LAELENQNIA HIAQTTVSSS LGVHQAIKHC SVDLKLGNSG LLQDKLVEKF  60
AGPGDYLMES SSSGSSKRVR TPSNGNQVPS CLVDGCIADL SKCRDYHRRH KVCELHSKTP  120
KVFIKGQEQR FCQQCSRFHS LVEFDEGKRS CRKRLDGHNR RRRKPQPDSV SVNSARLFSN  180
HEGTRYLQFG GSQIFSTSPQ SSAWTGAVKP ENDPMLYTSQ SSLNFNSGKN LFPGSLSQGY  240
RSGKQFPFLQ CTSSSAVPRE SVCQTILDSD STLGSSCSSQ KMFSDGANRV IDSNRALSLL  300
SSPSAQTREI GLSHMVQPDL NPPARSLNPS LNFNALGMGS GPVESVLVSD GSSNANLHGQ  360
DMFQIVPDGS SANGSLQTLS FSWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29911641184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085714.10.0squamosa promoter-binding-like protein 16 isoform X3
RefseqXP_020539135.10.0squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020539136.10.0squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020539137.10.0squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A2C9UPR60.0A0A2C9UPR6_MANES; Uncharacterized protein
STRINGcassava4.1_009507m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-51SBP family protein