PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Jcr4S01142.80

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 819aa MW: 91741.6 Da PI: 7.2454

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01142.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	105	126	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H Jcr4S01142.80 105 KCEKCSREFCSSINYRRHIRVH 126 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.429	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MPVAKLKASS NTDVMKAEEG NDSLDTFIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ 60 GRHLESCYDL ALFGIETMHL ILLPLLLPDL PGWPLLTPLK VQMQKCEKCS REFCSSINYR 120 RHIRVHHRLK KLDKDSSKNR DLLGTFWDKL SEDEAKEILS FKDVLLEEVP GSSIIKSLMA 180 LIRKPGFSSL PQYCLRAGSA LLDIIQARPS RFPLSSEELF SILDDASEKT FLCGTAVSMQ 240 KYIFDGEAGK IGLETKNLVA CTSFLVEQQL VTFLLFHSFK AKVLSMYICK HVLNALVLHL 300 VKAWLADKDA EALRCQKLLV EEEEAAQRRQ AELLERKRQK KLRQKEQKAK EQRQGEQEDL 360 KERIDDILEA VPSAEMSCPL NECDSTVHGL ESLPDHVPLL LEPFQLPNTD EGVDLEIQTV 420 SGTGYSDPGI SHNSEQRMVQ RNSRRHIVAR WNLSPKSQWN HVPNGFHASQ NSQAPKLGNV 480 QRHGNHRDSK LVPLINGNRK WSRKLKADYG GDSLKTRVQK EAINQPDQNK KHEVLIGSIS 540 VTLGNCSQQE DKIFDGARED SLSDHQMPKK NNVQDKQNRL DSAQCSTNRS TIKLWRPVSR 600 NGMKGPVVVE NDIRESQVDE LAEKVDDHTE SSVNYLSSSS VDDNYGGTEN GFPLPHGNVH 660 AVGWQFSCDA AKAFLAERWK EAIAAEHVKL VLSSDLKSSE GIEIQNDCLV SVAQSSDTKK 720 SGFLGNPENQ LVDVVVHESS TAGAGKAKFR TKPEKDLHSL IAITFLAEVP VLPKVFCPKI 780 EGRHCKVPLC KNFPVNLFSG RMEFAYAGSY SVIIIVTVL

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MPVAKLKASS NTDVMKAEEG NDSLDTFIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ  60
GRHLESCYDL ALFGIETMHL ILLPLLLPDL PGWPLLTPLK VQMQKCEKCS REFCSSINYR  120
RHIRVHHRLK KLDKDSSKNR DLLGTFWDKL SEDEAKEILS FKDVLLEEVP GSSIIKSLMA  180
LIRKPGFSSL PQYCLRAGSA LLDIIQARPS RFPLSSEELF SILDDASEKT FLCGTAVSMQ  240
KYIFDGEAGK IGLETKNLVA CTSFLVEQQL VTFLLFHSFK AKVLSMYICK HVLNALVLHL  300
VKAWLADKDA EALRCQKLLV EEEEAAQRRQ AELLERKRQK KLRQKEQKAK EQRQGEQEDL  360
KERIDDILEA VPSAEMSCPL NECDSTVHGL ESLPDHVPLL LEPFQLPNTD EGVDLEIQTV  420
SGTGYSDPGI SHNSEQRMVQ RNSRRHIVAR WNLSPKSQWN HVPNGFHASQ NSQAPKLGNV  480
QRHGNHRDSK LVPLINGNRK WSRKLKADYG GDSLKTRVQK EAINQPDQNK KHEVLIGSIS  540
VTLGNCSQQE DKIFDGARED SLSDHQMPKK NNVQDKQNRL DSAQCSTNRS TIKLWRPVSR  600
NGMKGPVVVE NDIRESQVDE LAEKVDDHTE SSVNYLSSSS VDDNYGGTEN GFPLPHGNVH  660
AVGWQFSCDA AKAFLAERWK EAIAAEHVKL VLSSDLKSSE GIEIQNDCLV SVAQSSDTKK  720
SGFLGNPENQ LVDVVVHESS TAGAGKAKFR TKPEKDLHSL IAITFLAEVP VLPKVFCPKI  780
EGRHCKVPLC KNFPVNLFSG RMEFAYAGSY SVIIIVTVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	341	ERKRQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090229.1	0.0	uncharacterized protein LOC105648450 isoform X1
TrEMBL	A0A067JEM2	0.0	A0A067JEM2_JATCU; Uncharacterized protein
STRING	cassava4.1_002652m	0.0	(Manihot esculenta)
STRING	XP_002513683.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-126	C2H2-like zinc finger protein