PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01114.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25775.3 Da PI: 5.046 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 2.9e-13 | 73 | 142 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksL 54 r+h e+Er+RR+riNs +++Lr l+P a s ++Ka+ L k++ Y+k+L Jcr4S01114.30 73 RNHCEAERKRRARINSHLDTLRNLVPGAKkfcldvfvevpaygaiefDILSSQMDKASLLAKVISYLKEL 142 57*************************888*****************99999****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-13 | 64 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.862 | 70 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 73 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-11 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-12 | 73 | 143 | No hit | No description |
SMART | SM00353 | 2.7E-12 | 76 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.2E-5 | 179 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEPHSWSSSV VTSDLEGLCD GFYMTSGFEA KTRNESCSSS SLVLDSQRGE LVEATVTVGR 60 KGVPAERSVE ALRNHCEAER KRRARINSHL DTLRNLVPGA KKFCLDVFVE VPAYGAIEFD 120 ILSSQMDKAS LLAKVISYLK ELKSTAAEAS EGFLVPTDTD EVRVEGQENG LDGTPCIIRV 180 SLSCDYKPGL LSDLRQALNK LQLTVMQAEI ATLEDRMKNV FVMTSCKEGH SEKY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079056.2 | 1e-147 | putative transcription factor bHLH107 isoform X2 | ||||
TrEMBL | A0A067KIZ3 | 1e-146 | A0A067KIZ3_JATCU; Uncharacterized protein | ||||
STRING | XP_002525116.1 | 1e-101 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 9e-27 | bHLH family protein |