PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01064.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 513aa    MW: 55569 Da    PI: 8.8692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01064.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05628123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+k F r  nL+ H r H
  Jcr4S01064.30  6 FICEVCNKGFQREQNLQLHRRGH 28
                   89*******************88 PP
2zf-C2H213.30.0002482104123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  Jcr4S01064.30  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-7528No hitNo description
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121712.5E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-777102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSSA  120
GSFISFMYSR VVVIECQKGD IVTGFVLMRD SFITHRAFCD ALAQESARHP TSLNTLGTHL  180
YGNNHMSLGL SQVGSQIPPL QDQNHHHPST NMLRLGGAGA AKFEHIISPP PPNSSTFFMS  240
DSNQTSFPSK PLHGLMQLPD LQNSTNNNNS TNLFNLSFFS NNTTPNRMSG NDNGANSSTG  300
TATNLVNSSF LNPNPNPNLY NMDDHVSSTA GIHSLYSNSM QQENITPHMS ATALLQKAAQ  360
MGSTSSPNNN STLLRGLAGS SSSASTKADR PPLVSTNFGN AEIESQNQLQ GLMNSLANGG  420
SSIFGGGHGH DDSFGGFAGG ISLEQPHNSG NFSNVEDAKL HQSLGMSIGG SDKLTLDFLG  480
VGGMVRNIGG GHHGITLSSL DTEIKSAQGN KPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-2978168364Zinc finger protein JACKDAW
5b3h_F9e-2978168364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-121AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072420.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-113IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A067KQ410.0A0A067KQ41_JATCU; Uncharacterized protein
STRINGcassava4.1_004443m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.16e-98indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]