PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01060.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27437.3 Da PI: 9.5361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 28 | 74 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++aa+++++g Jcr4S01060.30 28 GVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRG 74 9*****.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.484 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 28 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-31 | 28 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-13 | 28 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.14E-17 | 28 | 84 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-21 | 28 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MESKRLERKK WNXTPIPPRS ATEALGNGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE 60 AARAYDAAAR EFRGSKAKTN FPTVTELNNA AAAAVAAGAV TVARSPSQSS TVESSSPTPP 120 RAASPPPPLD LTLNIPSHQH HHLRHGHFPT GVIFPGGAWI SLAAEAHPVF FFDAFSAQGE 180 NNNNNKNNII NNNKIHSKNI NLCRLDRTVM VSSGVHSDSD SSSVVVDYDH DRSPCNKGLS 240 LDLDLNFPPA EVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 28 | 82 | 17 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ076327 | 0.0 | DQ076327.1 Jatropha curcas putative DRE-binding ERF3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295676.1 | 2e-82 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A067LBL1 | 1e-165 | A0A067LBL1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_015499m | 1e-65 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-21 | ethylene responsive element binding factor 4 |