PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00937.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 332aa    MW: 38362 Da    PI: 10.1465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00937.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.64e-12841621798
                    E--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  17 vlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +l+k f+++     + +    +  +l  ++g+ Wev++  +k  + +++ kGW++Fv++n ++ +  + F+++g+s+f  +v vf+
  Jcr4S00937.90  84 ILSKLFVKRLgielSDIA---RIGRLSLRNGKLWEVEV--TKDNKNIWFDKGWSDFVEDNSICHRYLLSFEYKGNSNF--RVIVFD 162
                    566666655555432222...2235555779*******..999999****************************9999..777776 PP
2B338.52e-122513311798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     +p++f ++++       + ++  ++gr++ v+++ +++  +  +++GW + ++  +LkegD+v+++l+++ ++f +++kvfr
  Jcr4S00937.90 251 LVPNSFSAKYMTRV--YEEAKVACPDGRKFLVRIRGWGTVTGLAFGTGWARICQHIDLKEGDVVILELINSsMDFLFKIKVFR 331
                    57999999996443..3379999**********************************************888***99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.82E-866162No hitNo description
SMARTSM010191.6E-466164IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1572174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1479171IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-8105161IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87106164IPR003340B3 DNA binding domain
SMARTSM010190.46241331IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-11250331IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-10251331IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-10252331IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318252332IPR003340B3 DNA binding domain
CDDcd100175.67E-9273327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRIPLRLLVK SIGSDRISDV PRLCAPNGYE WQVKTLHIMT RWPSAGGGRR GSPRWPSTER  60
GRGRPFRKSN PSSDVTPRHF FRSILSKLFV KRLGIELSDI ARIGRLSLRN GKLWEVEVTK  120
DNKNIWFDKG WSDFVEDNSI CHRYLLSFEY KGNSNFRVIV FDPSTFEINY PNSNFENENG  180
KAESRTDKMM GKKEDRLVLS NENEKDENKN VEVEVYCSEK YRKFFAKASD EIKKAILDAD  240
MYKPTNPAFK LVPNSFSAKY MTRVYEEAKV ACPDGRKFLV RIRGWGTVTG LAFGTGWARI  300
CQHIDLKEGD VVILELINSS MDFLFKIKVF RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534953.11e-179B3 domain-containing transcription factor VRN1
TrEMBLA0A067LFX70.0A0A067LFX7_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-14B3 family protein