![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S00937.130 | ||||||||
Common Name | JCGZ_10019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 402aa MW: 46533.4 Da PI: 9.3413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 23 | 109 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l+ ++ lk + l +p kf++++g + s tl+ ++gr W v+l +kk+g+ ++ +GW eFv+ ++ g f+vFk+ g+s+f + +f Jcr4S00937.130 23 LMVASILKDKKLKIPEKFVKKYGDE--LSSIATLTVPNGRIWLVEL--EKKDGKLWFHNGWHEFVEYYSVRLGYFLVFKYGGDSNF--NTYIF 109 44566778888***********865..7779***************..********************************999999..66666 PP | |||||||
2 | B3 | 60.8 | 2.2e-19 | 296 | 388 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f +l ps+v + +l +p++fa+++ ++ + ++l+ ++g++W v++ + g+ l kGW eFv +ngL+egD++vF+l+++++ l+v+ Jcr4S00937.130 296 FRVILRPSYVYRGFLLHIPNDFAQKYLVVT-R--YIKLQVSKGKEWPVRC--VCGHGKAKLCKGWTEFVWENGLEEGDVCVFELVNTMDILLKVT 385 667899********************6553.3..6***************..55555667999**********************9999999999 PP EE- CS B3 96 vfr 98 +fr Jcr4S00937.130 386 IFR 388 998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-22 | 18 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 18 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.47E-18 | 19 | 110 | No hit | No description |
PROSITE profile | PS50863 | 13.408 | 19 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-15 | 20 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 23 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.8E-24 | 288 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-24 | 290 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.55E-21 | 294 | 388 | No hit | No description |
PROSITE profile | PS50863 | 13.874 | 296 | 390 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-14 | 296 | 390 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-17 | 296 | 388 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MSRLDGPEGP DSPAKGSCMF YKLMVASILK DKKLKIPEKF VKKYGDELSS IATLTVPNGR 60 IWLVELEKKD GKLWFHNGWH EFVEYYSVRL GYFLVFKYGG DSNFNTYIFD LTVSEIRYPC 120 NLPSSLQEKF QDNQNIAEKK HLTNDRLMEI LGSGSTSHSP GSNYLGKYGH CTWTPSGNYE 180 VSREGLIQRK DAYDVVEKFH SYRDIGVQFN ESELTSTADK FGLSFMGEAD GRTRKRRQIT 240 DPNKYEPKIK QKAYENSRRL KITSESLTRR WRPVTPEEKQ RTISTADMFK PNNPFFRVIL 300 RPSYVYRGFL LHIPNDFAQK YLVVTRYIKL QVSKGKEWPV RCVCGHGKAK LCKGWTEFVW 360 ENGLEEGDVC VFELVNTMDI LLKVTIFRVL EDVIPVNQLP MP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-43 | 265 | 393 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-43 | 265 | 393 | 18 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 232 | 237 | TRKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF502108 | 4e-46 | JF502108.1 Jatropha curcas clone Jcuint064 SSR sequence. | |||
GenBank | JF502150 | 4e-46 | JF502150.1 Jatropha curcas clone Jcuint221 SSR sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534099.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_020534102.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A067LNX8 | 0.0 | A0A067LNX8_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_033218m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-76 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|