PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00937.120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 471aa    MW: 53734.1 Da    PI: 10.1177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00937.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-1529120199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ +ps   +++ +++p kf++++g +   s  +t+  ++g  W+v l  ++  + +++ +GW +Fv+ n +++g f+vF ++g s+f   + 
  Jcr4S00937.120  29 FFKIILPSIIQEKK-MRIPDKFVRKFGDE--LSEVVTFIIPNGLDWKVGL--TRAESDIWFDDGWHDFVQHNSICTGYFLVFGYKGFSNF--SIL 116
                     78888787777776.***********866..8889***************..999999**************************987888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  Jcr4S00937.120 117 IFDK 120
                     8887 PP
2B356.26.5e-18370450487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     vl+++++ ++++l++p kfa+++ +   ++k ++l+ ++g++W v l  +++ gr +l+kGWk F+++n L+ gD+++F+l+++
  Jcr4S00937.120 370 VLLRPYNCRNSILYVPSKFAKRYLSR--GPKNIKLQVSDGKEWAVCLL-QQGYGRSLLGKGWKIFCRENTLEGGDVCLFELINN 450
                     67789999***************544..6778***************5.55556779***********************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2023123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-2128123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71728121IPR003340B3 DNA binding domain
CDDcd100171.35E-1328119No hitNo description
SMARTSM010192.2E-1129121IPR003340B3 DNA binding domain
PfamPF023621.3E-1129120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-10257326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-11258326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.556264327IPR003340B3 DNA binding domain
SMARTSM010191.3265350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-26360459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-23361459IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-17366458No hitNo description
PROSITE profilePS5086314.706367461IPR003340B3 DNA binding domain
SMARTSM010193.3E-15368462IPR003340B3 DNA binding domain
PfamPF023624.0E-16370450IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAWRREVEIN NGNHRGLPHS PVDRPLLSFF KIILPSIIQE KKMRIPDKFV RKFGDELSEV  60
VTFIIPNGLD WKVGLTRAES DIWFDDGWHD FVQHNSICTG YFLVFGYKGF SNFSILIFDK  120
TACEIKYPDK GSVCGQNCLI PYENGVDKNN SAIPSPFTSY SLKSKLFVET PTRGDSSKRR  180
AGARNSGIKK QCGGVGSMVN PNVNTKRKRI EKEEAVEITN IDTNESKREK FHKQRMSSSK  240
VQLVSPKSEK AIRAARMLQP KNPSFMVVLR SSSLMKNIVC VPIRFARRYL SRGLEFIKIQ  300
DSDGRDWSVN LCWDSHRVNL GRGWNSVENY KEDLEIITSE MFGCAKPSPE SQRAIEAARM  360
LKPKNPSFMV LLRPYNCRNS ILYVPSKFAK RYLSRGPKNI KLQVSDGKEW AVCLLQQGYG  420
RSLLGKGWKI FCRENTLEGG DVCLFELINN YVLKVFIFHA VEISNPKIMA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2035046231144B3 domain-containing transcription factor VRN1
4i1k_B3e-2035046231144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534852.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A067LMY10.0A0A067LMY1_JATCU; Uncharacterized protein
STRINGXP_002519138.11e-131(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-47B3 family protein