PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00937.110 | ||||||||
Common Name | JCGZ_10021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 20624.3 Da PI: 9.7051 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 54 | 117 | 32 | 99 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +t +l ++g++Wev++ +k+++ +++ kGW++Fv++n ++ + + F ++g+s+f +v +f+ Jcr4S00937.110 54 IARTARLSLRDGKVWEVEV--TKNDKYIWFDKGWSDFVEDNSICHRYLLSFDYKGNSNF--HVIIFDP 117 45688889999********..**********************************9999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.8E-6 | 28 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.74E-10 | 37 | 116 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-16 | 38 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-15 | 38 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.5E-10 | 54 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.659 | 60 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MARRPSAGGG RSWRSCWPSI KRGRGRPFGK SNPSSESIPS KLFVKRLGIE LSDIARTARL 60 SLRDGKVWEV EVTKNDKYIW FDKGWSDFVE DNSICHRYLL SFDYKGNSNF HVIIFDPSTF 120 EINYPNSDFE NENEKVGREN HDPERDDFRK RTKLDQARGK MTMTEMRCAC KECKSKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072584.1 | 3e-97 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A067LCH7 | 1e-128 | A0A067LCH7_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-15 | B3 family protein |
Publications ? help Back to Top | |||
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