PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00934.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 708aa    MW: 79796.5 Da    PI: 6.4291
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00934.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07646700147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg...kgRtlkqcksrwqky 47 
                      + +WT+ E+e l+++v+++ +       Wk+I ++      +Rt  ++k++w++ 
    Jcr4S00934.20 646 KVPWTAKEEEMLKEGVQKFATVgdrtiPWKKILEYGSmvfSHRTTVDLKDKWRNM 700
                      579****************977999*********98899*9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.21E-10365419IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.707369418IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.101.7E-9370418IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002494.1E-7371416IPR001965Zinc finger, PHD-type
PROSITE patternPS013590372415IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS512949.661641705IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-11643704IPR009057Homeodomain-like
SuperFamilySSF466895.62E-12643702IPR009057Homeodomain-like
SMARTSM007172.1E-4645703IPR001005SANT/Myb domain
CDDcd116601.75E-14647702No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MSNLMADYSR MAWLLAIEYL AKFQQLDPSI LHGFGKRHKG NGCFKMLGAV VWSLVKKLGN  60
DVPSVTEPKD AFDFSKSCED VLQSVLKERA VSDLKMSGGN LLKWDIHLFI MHKRASVPKC  120
ALEQLKDTIL EAGDYQDEQD GDRNLNVKRF KQDTFCANKC MEHVLNPQCG NELVEDSSEA  180
MVRVTEDGSC HVEGESQAGG LGECRYSEND HSKFVAIERP GRSPNANADG EFQQYQCEND  240
HNANNMLPDA SGDRPCQYTL VDEVNKAEPS TSNDAPSARS QQKVFAADTN ANSDCNKVKS  300
ANADSSTEIS RRITVEKADC RMEHFYEEDT SIDGDEYHHQ RVDVAMEKSN FLSSQCTLSH  360
VSQESWTQLN LCVKCSEGGQ LLVCNAVGCP LVVHEKCLGS SPRFDEKGDF YCPFCAYSLA  420
ISEYLQAKKK ASLARKELGA FICRRTKRSH SNQQNNFKQN EDGCHLHMVH ERGSLAEKEY  480
DQTNNEGHAN KVNDQLKKRQ GDRQPMKPII SCLDVNLLDK EKEPNVIPGE KERKELAPEC  540
QHVRETDRQD QTCADPKSNG DNQMSKNKEV LVSLNEKQSE GGIQRTVLEQ QNSDLIEKPV  600
GAIDIDRETS VEGNEKNIIS NYSRKFRGRG TEYVSPALPQ ILRRKKVPWT AKEEEMLKEG  660
VQKFATVGDR TIPWKKILEY GSMVFSHRTT VDLKDKWRNM CKGSSKCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080641.10.0uncharacterized protein LOC105640858 isoform X1
TrEMBLA0A067KG490.0A0A067KG49_JATCU; Uncharacterized protein
STRINGcassava4.1_003693m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.16e-09TRF-like 3