PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00929.30

Common Name

JCGZ_22730, LOC105628952

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HSF

Protein Properties

Length: 283aa MW: 32932.9 Da PI: 8.2513

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00929.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.9	5e-36	30	122	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+ +++++sw ++++sfvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgFkkv ++ weF++++F+kg k+ll++i Jcr4S00929.30 30 FLTKTYQLVDDPLTDHIVSWGDDQTSFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLLSEI 116 9**************************************************************999.........*************** PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 +r+k++ Jcr4S00929.30 117 HRRKTS 122 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.6E-38	22	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-57	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.81E-33	27	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-31	30	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	69	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-19	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAFILERSSN SSIEEMVFCV ESQKAVPAPF LTKTYQLVDD PLTDHIVSWG DDQTSFVVWR 60 PPEFSRDLLP NYFKHNNFSS FVRQLNTYGF KKVVADRWEF ANEYFRKGAK HLLSEIHRRK 120 TSQTHHQQQH FHDNQSSSLP QILQQDQENF GWNNLDSSFL CPPKPTNDIL TALSEDNQRL 180 RRKNYMLLSE LSHMKTLYND IIYFIQNHVK PTTPNYEQKI TNYNATSPKI VELLGSVKNN 240 NNNNKSSISS NLNEESNIKL FGVSLSGKKR VHQEVIGHQQ ELI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-22	26	122	17	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065837.1	0.0	heat stress transcription factor B-4
Swissprot	Q9C635	6e-90	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A067L7I0	0.0	A0A067L7I0_JATCU; Uncharacterized protein
STRING	cassava4.1_032852m	1e-127	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-86	heat shock transcription factor B4

Link Out ? help Back to Top
Entrez Gene	105628952

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]