PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00928.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

SRS

Protein Properties

Length: 438aa MW: 44619.9 Da PI: 8.0031

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00928.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.5	7.2e-68	221	382	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 +sgt++CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq +++aa a s+ +++ k++r +++q+++s+t++s++++ Jcr4S00928.20 221 SSGTTTCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMASAAGGGGAVSSgSTSGIKKPRL--INSQTTTSHTSTSNTTP 314 57899********************************************88877776665555535666666665..6999********* PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++tss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e+ Jcr4S00928.20 315 PRSFDTSSshqdasfkeaLPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 382 **999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-62	224	381	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.6E-27	226	268	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.8E-30	333	380	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MAASIVVVAT TRSRQLLSDS GAFADWAGSS SSSAIRAAGP DDLSLGFNAG PTAAAAAATA 60 AAGGGPTGPS WPSAARPINY GIPPEMGMFV VAPAASFNHH HHHQQHESNI NLANDPINGS 120 NAAAAAAAAT ALGVGVGVGV IPLLTAGPCL GSQNMDDQDL LSNGRNRVSG IQFWQNQHSQ 180 YNIKKTTGSI LDHHNNSSSP NLLQTGNNTN SGGGIGGNST SSGTTTCQDC GNQAKKDCTH 240 RRCRTCCKSR GYDCATHVKS TWVPAARRRE RQLMASAAGG GGAVSSGSTS GIKKPRLINS 300 QTTTSHTSTS NTTPPRSFDT SSSHQDASFK EALPGQVRAP AVFKCVRVTA VDDGEDEYAY 360 QAVVKIGGHV FKGFLYDQGV ETRDGFPNIS ELHLGGGGGD GGGRNGASSS SPILDPTDVY 420 GASGGGLLGG SSYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MAASIVVVAT TRSRQLLSDS GAFADWAGSS SSSAIRAAGP DDLSLGFNAG PTAAAAAATA  60
AAGGGPTGPS WPSAARPINY GIPPEMGMFV VAPAASFNHH HHHQQHESNI NLANDPINGS  120
NAAAAAAAAT ALGVGVGVGV IPLLTAGPCL GSQNMDDQDL LSNGRNRVSG IQFWQNQHSQ  180
YNIKKTTGSI LDHHNNSSSP NLLQTGNNTN SGGGIGGNST SSGTTTCQDC GNQAKKDCTH  240
RRCRTCCKSR GYDCATHVKS TWVPAARRRE RQLMASAAGG GGAVSSGSTS GIKKPRLINS  300
QTTTSHTSTS NTTPPRSFDT SSSHQDASFK EALPGQVRAP AVFKCVRVTA VDDGEDEYAY  360
QAVVKIGGHV FKGFLYDQGV ETRDGFPNIS ELHLGGGGGD GGGRNGASSS SPILDPTDVY  420
GASGGGLLGG SSYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065907.1	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X1
Refseq	XP_020532969.1	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X1
Swissprot	Q94CK9	3e-88	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A067L4D4	0.0	A0A067L4D4_JATCU; Uncharacterized protein
STRING	cassava4.1_010457m	1e-165	(Manihot esculenta)
STRING	XP_002530898.1	1e-165	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]