PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00899.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 691aa    MW: 76912.9 Da    PI: 4.9599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00899.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-5391401127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp GfrF+Ptdeelv++yL+ k++g++ e+ evi+evdi+k+ePwdLp+   +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s
  Jcr4S00899.90   9 LPLGFRFRPTDEELVNHYLRLKINGRNSEV-EVIPEVDICKWEPWDLPElsVIKTDDPEWFFFCPRDRKYPNGQRSNRATDAGYWKATGKDRTIKS 103
                    699************************999.99**************94447888889************************************** PP

            NAM  95 kkgel....vglkktLvfykgrapkgektdWvmheyr 127
                    +k+      +g+kktLvfy+grapkge+t+W+mheyr
  Jcr4S00899.90 104 RKSGSnpisIGMKKTLVFYRGRAPKGERTNWIMHEYR 140
                    943334566***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-604164IPR003441NAC domain
PROSITE profilePS5100556.3449164IPR003441NAC domain
PfamPF023659.5E-2810140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAVLSMESLP LGFRFRPTDE ELVNHYLRLK INGRNSEVEV IPEVDICKWE PWDLPELSVI  60
KTDDPEWFFF CPRDRKYPNG QRSNRATDAG YWKATGKDRT IKSRKSGSNP ISIGMKKTLV  120
FYRGRAPKGE RTNWIMHEYR PTLKDLDGSA PGQSAFVLFR LFRKPEEKTD TVKYDEVEQT  180
GYSPTTSKSS PDDTSSDLVQ ETATSAVQVG KQSEGIAKWL IDEADNMTPS VAAPVDSSCN  240
SHSDVEDHAA EAIDMVVHPP SEENSHRYEP TSGDIDCKVF SPVQSHIHAD LPYYMDSPYA  300
CDFGNDQNGF RFQDGASEPD VSLTELLGEV FNNNDDCSGE ELTNQQNPAI GSNTHLASHM  360
LLGNFHVKDN GVYNEPDTDH FQVLELLQMQ SSFGPWGAQA SSFDGELGGR NICGLGNNSI  420
VQDAPSAFGA LNSMEESSSL MNPVYPGSAV TGTGIKIRTR QPQMRPYADS FAAQGTAPRR  480
LRLKMEYSTG SCGNMVERDA SHEEDEEVES AITEARDAEH NPSSDELVKE NQLLNSDKKR  540
EINKEASSNL RLRVKRDDNF DSSETGSSRI PDAAPAKSSH GSSPVYLLRV LLVLILFVVL  600
VGICRVKELF PVQDSAEKEI YTLKRSKRKN MILVAIVAEL LEEYTAVLAR MLEHMFNEAP  660
FPRRIRFLIL RSLPFASSSH PPPLIRGPAS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-44814014139Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753330.0KC775333.1 Jatropha curcas NAC transcription factor 055 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086562.10.0protein NTM1-like 9 isoform X1
TrEMBLR4NEW20.0R4NEW2_JATCU; NAC transcription factor 055
STRINGXP_002518952.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-134NAC transcription factor-like 9