PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00899.120
Common NameJCGZ_20332, LOC105645550
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 394aa    MW: 44296.7 Da    PI: 8.5649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00899.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.71.7e-3196200199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++ + W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  Jcr4S00899.120  96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTRKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGmGDsGK 190
                     89***************************966778999*************************************************65588899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  Jcr4S00899.120 191 DRLYIDWRRR 200
                     9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-4189208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2993200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-2694188No hitNo description
SMARTSM010191.1E-2096201IPR003340B3 DNA binding domain
PfamPF023621.0E-2896200IPR003340B3 DNA binding domain
PROSITE profilePS5086314.15696201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDFGSPFTED DQMSKANKLP FSYSSSSSPS SSSSHHHKLT QIYDNPQHHH QMASWLGTKY  60
ETAQEDTSTG ANKLDLMDVN DDEDQSVAVV EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK  120
YFPLDSSTNE KGLLLNFEDR TRKAWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS  180
FQRGMGDSGK DRLYIDWRRR PDAPDPTSHN QHRHLSSIPW SPLLMRPPAV PMVPRDHLHL  240
SNPNRNMYNY NIGYGYAYSS SNSSSTGTIV YMRSAAPQQV GTGMVQRQQG GGGGFVEPMV  300
YESVPVVQGK AALKRLRLFG VNMDCLIMDS QECDKIMSSP LPIAIPSSSS TMAQLSSASH  360
NPLQLRHYNG TQLPPPPTQF LHKGKSSMSL DLEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-67892011114B3 domain-containing transcription factor NGA1
5os9_B2e-67892011114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086558.10.0B3 domain-containing transcription factor NGA1
SwissprotO827991e-77NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A067JMG90.0A0A067JMG9_JATCU; Uncharacterized protein
STRINGcassava4.1_022877m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-74B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]