PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00876.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 300aa    MW: 33693.1 Da    PI: 9.3432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00876.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-15149194148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E +l ++++ +lG++ W++Ia +++ gRt++++k++w++++
    Jcr4S00876.10 149 RGEFTSDEIDLMIRLHSLLGNR-WSLIAGRLP-GRTANDVKNFWNTHM 194
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174498145IPR001005SANT/Myb domain
SuperFamilySSF466891.92E-20124202IPR009057Homeodomain-like
PROSITE profilePS500904.112126143IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-10129154IPR009057Homeodomain-like
PROSITE profilePS5129422.631144198IPR017930Myb domain
SMARTSM007171.5E-13148196IPR001005SANT/Myb domain
PfamPF002494.1E-13149193IPR001005SANT/Myb domain
CDDcd001673.75E-10151194No hitNo description
Gene3DG3DSA:1.10.10.602.0E-18155199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
TTARTAGSNR FEPTVLTGRR TGSSSPVLWN RRVSGSSFAG TGTELVFFRF QFRFVPVPVL  60
TGSGYGSGPV RTDGDIYCIP WRVLYHTEYL EKVLGPLLKT TFSEAAFEYM EKANGIKSLQ  120
ELVLSLCLNR CRKSCRLRWL NYLKPDIKRG EFTSDEIDLM IRLHSLLGNR WSLIAGRLPG  180
RTANDVKNFW NTHMHKKLRL SDPHCKEDDV KDKTVKISWP QPCKFSKNIS LFTATAKDKY  240
QHENDNDNDN LGNGKASVTV AFPPLDSKDD INNQPNTTNP LAGEGAPTFF EGEGSSDYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-159119818128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346980.0KM034698.1 Jatropha curcas clone JcMYB078 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080577.11e-120transcription factor MYB114
TrEMBLA0A067KGP81e-118A0A067KGP8_JATCU; MYB family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-38myb domain protein 113