PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00782.110
Common NameJCGZ_05892, LOC105650680
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 339aa    MW: 38093.6 Da    PI: 7.9468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00782.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.6e-5551311129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv++ +++  ++i +vd++k+ePw+Lp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk++++ 
  Jcr4S00782.110   5 LPPGFRFHPTDEELITFYLTRKVSDVSFTS-KAIVDVDLNKSEPWELPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKDIFR- 97 
                     79*************************999.88***************988999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfykgrap+gek++Wvmheyrle
  Jcr4S00782.110  98 GGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                     ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-643151IPR003441NAC domain
PROSITE profilePS5100560.4675151IPR003441NAC domain
PfamPF023651.5E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT FYLTRKVSDV SFTSKAIVDV DLNKSEPWEL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKDIFRGGV LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHPFKHNK EEWVVCRVFQ KSSPAAKKPQ PTLSSQQSLG SPCDDTNSIV  180
NEFGDIELPN LNNIVNSSSS TCFNSLSSTV QNTNFLTTNN NDTNVNLNTN MNMNWATTLP  240
SLSWPSSLLS SNLTMNSLLL KALQFRSYQQ GEGAASSSTT NPYSFLTQGI PQFVGTTTDC  300
ISSNNFQAAS SSLSSKVLES VLPQQQPQQE QPFNLDSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B6e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A6e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B6e-57415716171NO APICAL MERISTEM PROTEIN
3swm_A6e-57415719174NAC domain-containing protein 19
3swm_B6e-57415719174NAC domain-containing protein 19
3swm_C6e-57415719174NAC domain-containing protein 19
3swm_D6e-57415719174NAC domain-containing protein 19
3swp_A6e-57415719174NAC domain-containing protein 19
3swp_B6e-57415719174NAC domain-containing protein 19
3swp_C6e-57415719174NAC domain-containing protein 19
3swp_D6e-57415719174NAC domain-containing protein 19
4dul_A6e-57415716171NAC domain-containing protein 19
4dul_B6e-57415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752830.0KC775283.1 Jatropha curcas NAC transcription factor 005 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093009.10.0NAC domain-containing protein 100
SwissprotQ9FLJ22e-85NC100_ARATH; NAC domain-containing protein 100
TrEMBLR4NEP00.0R4NEP0_JATCU; NAC transcription factor 005
STRINGPOPTR_0015s03700.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-108NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]