PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00745.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 292aa    MW: 33626.8 Da    PI: 8.0575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00745.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.42e-5591341128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeelvv+yL++++++k++++  +i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +
  Jcr4S00745.90   9 LPPGFRFHPTDEELVVYYLRNQASSKPCPV-AIIPEVDIYKFDPWQLPEKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-G 102
                    79****************************.88***************99999*****************************************.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++ vg+kk Lvfykgr pkg+ktdW+mheyrl
  Jcr4S00745.90 103 SKYVGVKKALVFYKGRPPKGVKTDWIMHEYRL 134
                    99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-664170IPR003441NAC domain
PROSITE profilePS5100560.4499170IPR003441NAC domain
PfamPF023652.3E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLGKNSSNLP PGFRFHPTDE ELVVYYLRNQ ASSKPCPVAI IPEVDIYKFD PWQLPEKAEF  60
GENEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGSKYVGVKK ALVFYKGRPP  120
KGVKTDWIMH EYRLNDSRKQ ANKHNGSMRV SPSDIIELLD DWVLCRIYKK RHVGRHLEEK  180
IENTSTQTDL PDTSDASEQQ LFKFPRTCSL THLLEFEYMG SISHLLNDNG SYNSNFEFQN  240
FIGNSNALTD QGAKFQLGEM NSQYTDSGKF QANQSSVLNQ PLLMNPMVYE FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-68817116166NO APICAL MERISTEM PROTEIN
1ut4_B7e-68817116166NO APICAL MERISTEM PROTEIN
1ut7_A7e-68817116166NO APICAL MERISTEM PROTEIN
1ut7_B7e-68817116166NO APICAL MERISTEM PROTEIN
3swm_A9e-68817119169NAC domain-containing protein 19
3swm_B9e-68817119169NAC domain-containing protein 19
3swm_C9e-68817119169NAC domain-containing protein 19
3swm_D9e-68817119169NAC domain-containing protein 19
3swp_A9e-68817119169NAC domain-containing protein 19
3swp_B9e-68817119169NAC domain-containing protein 19
3swp_C9e-68817119169NAC domain-containing protein 19
3swp_D9e-68817119169NAC domain-containing protein 19
4dul_A7e-68817116166NAC domain-containing protein 19
4dul_B7e-68817116166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544600.0KM454460.1 Jatropha curcas NAP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067682.10.0NAC transcription factor 29
SwissprotK4BNG71e-123NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0H3WIU40.0A0A0H3WIU4_JATCU; NAP
STRINGcassava4.1_013467m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-116NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]